LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g00267	ATGGAACAGCATCATCTGCCACCGCCCACCAATAACACCCATGGTGGCACGCGCCACCCGCTCTACCGCGGCGTCAGGAAGCGCCGCTGGGGCAAGTGGGTTTCCGAGATTCGAGAGCCTCGCAAGAAATCCCGCATATGGCTCGGTTCCTTCCCTGTTCCCGAAATGGCTGCCAAGGCATACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCGCAGCTCAACTTCCCCGACCAGGTCCACCTCCTCCCGCCGCTCCCCTCCACCTGCTCCGCCAGGGACATCCAGGTCGCCGCCGCCAAGGCCGCCAACTCCGTGAAGGATTCTGTCGCTTCCACCCGCGGTGGTGCCGATGATGAGGATGATTTCTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGTGGTTGCTGGAGCTCTCCGAGTGGGTCGTCGTGGACTACTTCCTCCGGCGACATCACGGCGTGGCCGGAGGTGGAGCAACCCTTCACGGCGTGTTTATGA	513	0.5965	MEQHHLPPPTNNTHGGTRHPLYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDXXXXXXXXXKAQLNFPDQVHLLPPLPSTCSARDIQVAAAKAANSVKDSVASTRGGADDEDDFWGEIELPELMDGECGCWSSPSGSSWTTSSGDITAWPEVEQPFTACL	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g00267	170	SMART	rav1_2	21	84	IPR001471	GO:0003700\|GO:0006355
	Arst6g00267	170	MobiDBLite	consensus disorder prediction	1	17	-	-
	Arst6g00267	170	MobiDBLite	consensus disorder prediction	1	22	-	-
	Arst6g00267	170	Pfam	AP2 domain	20	62	IPR001471	GO:0003700\|GO:0006355
	Arst6g00267	170	ProSiteProfiles	AP2/ERF domain profile.	21	78	IPR001471	GO:0003700\|GO:0006355
	Arst6g00267	170	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	11	133	-	-
	Arst6g00267	170	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Arst6g00267	170	PRINTS	Ethylene responsive element binding protein signature	44	60	IPR001471	GO:0003700\|GO:0006355
	Arst6g00267	170	SUPERFAMILY	DNA-binding domain	21	80	IPR016177	GO:0003677
	Arst6g00267	170	CDD	AP2	20	80	IPR001471	GO:0003700\|GO:0006355
	Arst6g00267	170	FunFam	Ethylene-responsive transcription factor 2	20	79	-	-
	Arst6g00267	170	Gene3D	AP2/ERF domain	21	80	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g00267	Arst-Chr6	2300721	2301628	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g00267	17	170	AP2-EREBP Transcription Factor Family	AT1G01250	58.683	9.16e-45	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Arst6g00267		AP2	6.2e-11	CL0081