Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00267 ATGGAACAGCATCATCTGCCACCGCCCACCAATAACACCCATGGTGGCACGCGCCACCCGCTCTACCGCGGCGTCAGGAAGCGCCGCTGGGGCAAGTGGGTTTCCGAGATTCGAGAGCCTCGCAAGAAATCCCGCATATGGCTCGGTTCCTTCCCTGTTCCCGAAATGGCTGCCAAGGCATACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCGCAGCTCAACTTCCCCGACCAGGTCCACCTCCTCCCGCCGCTCCCCTCCACCTGCTCCGCCAGGGACATCCAGGTCGCCGCCGCCAAGGCCGCCAACTCCGTGAAGGATTCTGTCGCTTCCACCCGCGGTGGTGCCGATGATGAGGATGATTTCTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGTGGTTGCTGGAGCTCTCCGAGTGGGTCGTCGTGGACTACTTCCTCCGGCGACATCACGGCGTGGCCGGAGGTGGAGCAACCCTTCACGGCGTGTTTATGA 513 0.5965 MEQHHLPPPTNNTHGGTRHPLYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDXXXXXXXXXKAQLNFPDQVHLLPPLPSTCSARDIQVAAAKAANSVKDSVASTRGGADDEDDFWGEIELPELMDGECGCWSSPSGSSWTTSSGDITAWPEVEQPFTACL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00267 170 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Arst6g00267 170 MobiDBLite consensus disorder prediction 1 17 - -
Arst6g00267 170 MobiDBLite consensus disorder prediction 1 22 - -
Arst6g00267 170 Pfam AP2 domain 20 62 IPR001471 GO:0003700|GO:0006355
Arst6g00267 170 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Arst6g00267 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 133 - -
Arst6g00267 170 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Arst6g00267 170 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Arst6g00267 170 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Arst6g00267 170 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Arst6g00267 170 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Arst6g00267 170 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00267 Arst-Chr6 2300721 2301628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00267 17 170 AP2-EREBP Transcription Factor Family AT1G01250 58.683 9.16e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst6g00267 AP2 6.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00267 K09286 - gmx:100819971 184.882