Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00264 ATGGCGAATCTGGAGTGCAATCTGAGGGGACCTCCCACTCCTACAGCTCAAACAGTTTGGATAGGTGAGGGAGATGAAGATCTCTACACAGAGCTATGGAAGCTGTGTGCAGGGCCTCTCGTGGATGTTCCCCGCACTGGGGAGAGAGTCTACTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAGGTGAACCAAGAACTGAGTCAGCAAATCCCTCATTTCAATCTTCCAACCAAGATTCTCTGCCGTGTTGTTCACATTCAGTTGCTGGCGGAACAGGAAACTGATGAAGTTTATGCCCGTATCACTTTGCTTCCAGAACCAGATCAAAAAGAGCCTACAATCCCTGATCCAAGTCCCGTGGAATCTCAAAGAGAAACGTTTCACTCTTTTAGCAAGATATTAACTCCCTCTGATACTAGCACACATGGAGGATGTTCAATTCGGCGTATGCATGCCACAGAGTGCCTACCTCCATTGCCATCACCTCCATCGGATGCAGATGAAAATTCCCCACCACCATCCCAGGAGTTGGTGGCGAAGGATCTTCATGGGTTCGAGTGGAAGTTTAAGCATGTATTAAGAGGTAAAGGAGATAAAGGAGGTTCACCAAAGAGGCACTTGTTCACAACTGGCTGGAGTACTTTTGTCACTTCCAAAAGACTGGTTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAAGATGGGGAAATGAGAGTTGGGATTAGGCGTCTTGCGCGGCAGCAGATCCCAATGCCTTCGTCCGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGCACCATGTTTGTGGTTTATTATAAACCAAGGAGTAGCCAGTTTATTATTGGCCTTAACAAATATCTGGAAGCAGTCAAAAATAAATTTACTGCTGGAATGCGTTACAAGATGAGGTTTGAAGTGGAAGAATCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCGCCAGGATGGTCAAACTCTCAATGGCGTTCCTTGAAGGTTCATTGGGATGAGCCGGCAACGTTTCCGAGACCAGAGAGGGTTTCTGCTTGGGAGATAGAGCCTTTTGTTGTCTCTACTGCGTTGGCCAAAAGGCCCAGGCATGCTGATCATACTTCATCATCTGAATTAGGTGGTGCTGAAGTCCAATGCAAGGAAAACCAGGTTGTATGGTCCTTGAGGCAGAAAGAAACCAATGGCAATCCCATGAATAGCCACTCCAGTAGCTCTCGGGTTCGTATGGAAGGAATATGGTCTAATTCACCACATGTGAGTGTCCCACCAAACCCCCCAAACAACAATGCTGCTGCAAAACAAGGCCTTTCACCTATTTCATCTAAACCGAATGATGATGGTTTGACTCATGATAAAGTTGAAGTAGATGGTAGAAAGAAGACTGAGAATCCCACCAAGATCTTTTTATTTGGAGTTAATTTGACTAACAACTTCCGTAGTAATGTGTCCCTTCCGGAGAAAGAACAGGCTTGCTCTGCCATTGTTCCCATTGGTCCCAAAGAATCTACTCCCATTACCATTACTGCATCAGCCACTCAGAATGCTCAGAATTCCAACTATTCAGTGTCCGATAAGGAGCAACAGAACCAAATTTCTTCTGATGTATTGCCAGCAGAGAAGCCTAGCAAGCTGGCATCCTTACCATCCATGAGGACTCGAACTAAGGTGCAAATGCAAGGTGTAGCTGTAGGGAGAGCTGTGGACCTAACCATGTTGAATGGCTATGACGAGCTTACAATTGAGCTTGAGAAACTGTTTCATATTGAGGGAGAACTCCGATCACAAAACAAATGGGCAGTTACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGCAACATTGTGAAACGGATTTACATTTATTCAAGGGAGGATGTGAAGAAGATGAAGTATAAACTCTCCGTGCCTTCGTCGGACTGCGAAGAGACTTTGTTGTCGAAAGAAGAGACTTAA 2061 0.4551 MANLECNLRGPPTPTAQTVWIGEGDEDLYTELWKLCAGPLVDVPRTGERVYYFPQGHMEQLQASTNQEVNQELSQQIPHFNLPTKILCRVVHIQLLAEQETDEVYARITLLPEPDQKEPTIPDPSPVESQRETFHSFSKILTPSDTSTHGGCSIRRMHATECLPPLPSPPSDADENSPPPSQELVAKDLHGFEWKFKHVLRGKGDKGGSPKRHLFTTGWSTFVTSKRLVAGDAFVFLRGEDGEMRVGIRRLARQQIPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRSSQFIIGLNKYLEAVKNKFTAGMRYKMRFEVEESPERRFSGTIVGVGDVSPGWSNSQWRSLKVHWDEPATFPRPERVSAWEIEPFVVSTALAKRPRHADHTSSSELGGAEVQCKENQVVWSLRQKETNGNPMNSHSSSSRVRMEGIWSNSPHVSVPPNPPNNNAAAKQGLSPISSKPNDDGLTHDKVEVDGRKKTENPTKIFLFGVNLTNNFRSNVSLPEKEQACSAIVPIGPKESTPITITASATQNAQNSNYSVSDKEQQNQISSDVLPAEKPSKLASLPSMRTRTKVQMQGVAVGRAVDLTMLNGYDELTIELEKLFHIEGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIYIYSREDVKKMKYKLSVPSSDCEETLLSKEET 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00264 686 Gene3D - 134 251 IPR015300 -
Arst6g00264 686 SMART B3_2 137 252 IPR003340 GO:0003677
Arst6g00264 686 FunFam Auxin response factor 573 666 - -
Arst6g00264 686 FunFam Auxin response factor 135 252 - -
Arst6g00264 686 Pfam AUX/IAA family 561 614 IPR033389 -
Arst6g00264 686 Pfam AUX/IAA family 622 660 IPR033389 -
Arst6g00264 686 Gene3D - 311 383 - -
Arst6g00264 686 FunFam Auxin response factor 311 382 - -
Arst6g00264 686 MobiDBLite consensus disorder prediction 452 471 - -
Arst6g00264 686 MobiDBLite consensus disorder prediction 160 183 - -
Arst6g00264 686 SUPERFAMILY DNA-binding pseudobarrel domain 128 279 IPR015300 -
Arst6g00264 686 CDD B3_DNA 135 250 IPR003340 GO:0003677
Arst6g00264 686 Pfam Auxin response factor 276 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Arst6g00264 686 Pfam B3 DNA binding domain 137 250 IPR003340 GO:0003677
Arst6g00264 686 ProSiteProfiles B3 DNA-binding domain profile. 137 252 IPR003340 GO:0003677
Arst6g00264 686 ProSiteProfiles PB1 domain profile. 578 661 IPR000270 GO:0005515
Arst6g00264 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 666 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst6g00264 686 MobiDBLite consensus disorder prediction 441 481 - -
Arst6g00264 686 SUPERFAMILY CAD & PB1 domains 573 654 - -
Arst6g00264 686 Gene3D - 574 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00264 Arst-Chr6 2235464 2239853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00264 24 665 B3 DNA Binding Superfamily AT4G23980 52.187 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst6g00264 AUX_IAA 1.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00264 K14486 - gmx:100820503 826.624