Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00262 ATGGCGAATCTGGAGTGCAATCTGAGGGGACCTCCCACTCCTACAGCTCAAACAGGTGAGGGAGATGAAGATCTCTACACAGAGCTATGGAAGCTGTGTGCAGGGCCTCTCGTGGATGTTCCCCGCACTGGGGAGAGAGTCTACTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAGGTGAACCAAGAACTGAGTCAGCAAATCCCTCATTTCAATCTTCCAACCAAGATTCTCTGCCGTGTTGTTCACATTCAGTTGCTGGCGGAACAGGAAACTGATGAAGTTTATGCCCGTATCACTTTGCTTCCAGAACCAGATCAAAAAGAGCCTACAATCCCTGATCCAAGTCCCGTGGAATCTCAAAGAGAAACGTTTCACTCTTTTAGCAAGATATTAACTCCCTCTGATACTAGCACACATGGAGGATGTTCAATTCGGCGTATGCATGCCACAGAGTGCCTACCTCCATTGCCATCACCTCCATCGGATGCAGATGAAAATTCCCCACCACCATCCCAGGAGTTGGTGGCGAAGGATCTTCATGGGTTCGAGTGGAAGTTTAAGCATGTATTAAGAGGTAAAGGAGATAAAGGAGGTTCACCAAAGAGGCACTTGTTCACAACTGGCTGGAGTACTTTTGTCACTTCCAAAAGACTGGTTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAAGATGGGGAAATGAGAGTTGGGATTAGGCGTCTTGCGCGGCAGCAGATCCCAATGCCTTCGTCCGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGCACCATGTTTGTGGTTTATTATAAACCAAGGAGTAGCCAGTTTATTATTGGCCTTAACAAATATCTGGAAGCAGTCAAAAATAAATTTACTGCTGGAATGCGTTACAAGATGAGGTTTGAAGTGGAAGAATCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCGCCAGGATGGTCAAACTCTCAATGGCGTTCCTTGAAGGTTCATTGGGATGAGCCGGCAACGTTTCCGAGACCAGAGAGGGTTTCTGCTTGGGAGATAGAGCCTTTTGTTGTCTCTACTGCGTTGGCCAAAAGGCCCAGGCATGCTGATCATACTTCATCATCTGAAATTGCTTCCAACACCCCTGCTTCTGCTTTTTGGTTTCATGGATCATCCATGTCCCATGATCCTGCAGAATTAGGTGGTGCTGAAGTCCAATGCAAGGAAAACCAGGTTGTATGGTCCTTGAGGCAGAAAGAAACCAATGGCAATCCCATGAATAGCCACTCCAGTAGCTCTCGGGTTCGTATGGAAGGAATATGGTCTAATTCACCACATGTGAGTGTCCCACCAAACCCCCCAAACAACAATGCTGCTGCAAAACAAGGCCTTTCACCTATTTCATCTAAACCGAATGATGATGGTTTGACTCATGATAAAGTTGAAGTAGATGGTAGAAAGAAGACTGAGAATCCCACCAAGATCTTTTTATTTGGAGTTAATTTGACTAACAACTTCCGTAGTAATGTGTCCCTTCCGGAGAAAGAACAGGCTTGCTCTGCCATTGTTCCCATTGGTCCCAAAGAATCTACTCCCATTACCATTACTGCATCAGCCACTCAGAATGCTCAGAATTCCAACTATTCAGTGTCCGATAAGGAGCAACAGAACCAAATTTCTTCTGATGTATTGCCAGCAGAGAAGCCTAGCAAGCTGGCATCCTTACCATCCATGAGGACTCGAACTAAGGTGCAAATGCAAGGTGTAGCTGTAGGGAGAGCTGTGGACCTAACCATGTTGAATGGCTATGACGAGCTTACAATTGAGCTTGAGAAACTGTTTCATATTGAGGGAGAACTCCGATCACAAAACAAATGGGCAGTTACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGCAACATTGTGAAACGGATTTACATTTATTCAAGGGAGGATGTGAAGAAGATGAAGTATAAACTCTCCGTGCCTTCGTCGGACTGCGAAGAGACTTTGTTGTCGAAAGAAGAGACTTAA 2121 0.4559 MANLECNLRGPPTPTAQTGEGDEDLYTELWKLCAGPLVDVPRTGERVYYFPQGHMEQLQASTNQEVNQELSQQIPHFNLPTKILCRVVHIQLLAEQETDEVYARITLLPEPDQKEPTIPDPSPVESQRETFHSFSKILTPSDTSTHGGCSIRRMHATECLPPLPSPPSDADENSPPPSQELVAKDLHGFEWKFKHVLRGKGDKGGSPKRHLFTTGWSTFVTSKRLVAGDAFVFLRGEDGEMRVGIRRLARQQIPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRSSQFIIGLNKYLEAVKNKFTAGMRYKMRFEVEESPERRFSGTIVGVGDVSPGWSNSQWRSLKVHWDEPATFPRPERVSAWEIEPFVVSTALAKRPRHADHTSSSEIASNTPASAFWFHGSSMSHDPAELGGAEVQCKENQVVWSLRQKETNGNPMNSHSSSSRVRMEGIWSNSPHVSVPPNPPNNNAAAKQGLSPISSKPNDDGLTHDKVEVDGRKKTENPTKIFLFGVNLTNNFRSNVSLPEKEQACSAIVPIGPKESTPITITASATQNAQNSNYSVSDKEQQNQISSDVLPAEKPSKLASLPSMRTRTKVQMQGVAVGRAVDLTMLNGYDELTIELEKLFHIEGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIYIYSREDVKKMKYKLSVPSSDCEETLLSKEET 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00262 706 FunFam Auxin response factor 132 249 - -
Arst6g00262 706 ProSiteProfiles PB1 domain profile. 598 681 IPR000270 GO:0005515
Arst6g00262 706 Pfam B3 DNA binding domain 134 247 IPR003340 GO:0003677
Arst6g00262 706 MobiDBLite consensus disorder prediction 157 180 - -
Arst6g00262 706 FunFam Auxin response factor 593 686 - -
Arst6g00262 706 CDD B3_DNA 132 247 IPR003340 GO:0003677
Arst6g00262 706 Gene3D - 131 248 IPR015300 -
Arst6g00262 706 FunFam Auxin response factor 308 379 - -
Arst6g00262 706 MobiDBLite consensus disorder prediction 472 491 - -
Arst6g00262 706 MobiDBLite consensus disorder prediction 1 21 - -
Arst6g00262 706 Pfam Auxin response factor 273 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Arst6g00262 706 SUPERFAMILY DNA-binding pseudobarrel domain 125 276 IPR015300 -
Arst6g00262 706 SUPERFAMILY CAD & PB1 domains 593 674 - -
Arst6g00262 706 ProSiteProfiles B3 DNA-binding domain profile. 134 249 IPR003340 GO:0003677
Arst6g00262 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 686 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst6g00262 706 SMART B3_2 134 249 IPR003340 GO:0003677
Arst6g00262 706 MobiDBLite consensus disorder prediction 461 501 - -
Arst6g00262 706 Gene3D - 308 380 - -
Arst6g00262 706 Gene3D - 594 686 - -
Arst6g00262 706 Pfam AUX/IAA family 583 680 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00262 Arst-Chr6 2235464 2239853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00262 21 685 B3 DNA Binding Superfamily AT4G23980 52.600 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst6g00262 B3 2.1e-17 CL0405