Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00246 ATGACATGCACAATATCAGAATCTCAATTTTGGATTTTAATCTTTAATTGCAATCATCATTTTCTTCATCATTCAACGCCTCTACACTACAGCATCATCTGCATCAGCTCTCACATATATGCAGGGTTTGCTTTTGTCTATTTTGAGGATGAGCGAGATGCTGAAGATGCAGTTCGTGCTCTTGACAACTTTCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGCGGTCGCCATCGTGATGGCTCAAAGTCAAACCAGAGGCCCACAAAAACACTATTTGTGATTAATTTTGATCCAATTCGCACCCGAGTTCGTGACATAGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGCATTCGTCGTAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATATTGGATAGAGTAGTGTCTGTTGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAGATATTATGACAGTCCTAGAAGAGGAGGTTATGGGAGATCACCCAGTCCAGGTTATAGGAGGAGACCGAGCCCTGACTATGGCCGTCCACGCAGTCCTGTATATGATAGGTACAATGGTCCAGCCTATGATAGGCGTAGGAGCCCTGAATATGGTAGGCCTCGGAGCCCTGACTATGGTAGGAACAGGAGTCCTGAATATGGGAGACATCGCAGTCGAACACCAATTCGAAGATCCAGAACTTAG 771 0.4423 MTCTISESQFWILIFNCNHHFLHHSTPLHYSIICISSHIYAGFAFVYFEDERDAEDAVRALDNFPFGYEKRRLSVEWARGERGRHRDGSKSNQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDRYYDSPRRGGYGRSPSPGYRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPEYGRPRSPDYGRNRSPEYGRHRSRTPIRRSRT 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00246 256 SUPERFAMILY RNA-binding domain, RBD 39 172 IPR035979 GO:0003676
Arst6g00246 256 MobiDBLite consensus disorder prediction 172 256 - -
Arst6g00246 256 SMART rrm1_1 98 164 IPR000504 GO:0003723
Arst6g00246 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 161 IPR000504 GO:0003723
Arst6g00246 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 66 IPR000504 GO:0003723
Arst6g00246 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 80 IPR000504 GO:0003723
Arst6g00246 256 CDD RRM2_AtRSp31_like 98 167 - -
Arst6g00246 256 Gene3D - 35 90 IPR012677 -
Arst6g00246 256 MobiDBLite consensus disorder prediction 215 247 - -
Arst6g00246 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 168 IPR000504 GO:0003723
Arst6g00246 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 42 112 - -
Arst6g00246 256 Gene3D - 91 177 IPR012677 -
Arst6g00246 256 FunFam Serine/arginine-rich splicing factor RS31 89 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00246 Arst-Chr6 2077118 2079561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00246 42 174 Eukaryotic Initiation Factors Gene Family AT1G49760 26.531 7.92e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00246 K12893 - gmx:100797709 323.939