Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00218 ATGGAGGACATGATAATCTCTCCCTCCTCGTCATCTTCTCTGGTGTCTATCCCACAAGAAAACACACCAACCCTTCAGCAAAAGCTTCACTTCCTACTCCAAAACCAGTTACCAGAATGGTGGGTCTATGGCATCTTCTGGCACACAACCAACGACGACAATGGCAATCTCTTTCTCTCCTGGGGAGACGGCCATTTCCAAGGCGCCAAAGACGCCTCCTCCCCGAGACTTATTCCTCATTACCCCATTTCAGTGACGGACAGATGCAGAAAGTTCAACAACAACAGCAACAATAACAATGACGGAGAATGGTTCTACATGATGTCTTTGACACGCACCTTTCCTATGGGCGAAGCTTTGTATTCTTCCCTACCCGGAAAGGCCTTTGGTTCGGGGTCTCCCATCTGGCTCAACGGGGACCTTCAATTCTGCGACTGTGACAGAGCTAAAGAAGCTTACATGCATGGCATCCGAACTCTCGTACACATTCCAACCACCGATGGCGTTCTTGAAATGGGTTCCTACGATCTCATCACTGAAAACTGGGCTCTACTTCAACAAACCAAGTCCCTCTTTGGATCGCAACACCAGCAACTCAATCCTATACAGTTCTTCGACGACCAGAACATCTCCTTCGCTGACATTGGCATTATCGCCGGCGTTCAAGAAGAAGACAACTCACACGAAGAAGATGCCGTCAGAAAGAGAAAGGAAACGGAAGCACTCAACAACAAGAAAAAGAATAAGGATCACTCGTCAATGGGGAAGTTCAGATCATCGCGTCAATCGTCCTTCGTGGATTCGGAGCATTCAGACTCGGACTGTGGTGCACCAATGGCGGCAGCGGAGAAGAGGTTGCCGAAGAAGAGAGGGAGGAAACCAGGGATAGGGCGTGAAACCCCGCTGAACCACGTGGAGGCAGAGCGGCAGCGGAGGGAGAAGCTCAACCACCGGTTCTATGCTCTGAGGGCGGTGGTTCCAAACGTGTCAAGGATGGACAAGGCTTCTTTGCTTTCCGACGCGGTGTCTTACATAAACGAGCTGAAGGCAAAGATCGAAGAGTTAGAGACTCAGGTTCAGAAGGAGTCATCGATGAACAACAATAATAAGAAGGTGAAGGTTGAAACTGGCGACAGCATGGACAACCAGAGCACCACCACAACCTCCTCCGTGGACCAAAACAATAACGAGAATGAGGCGGCAGAGGTGCAGGTGGAGGTGGAGGTGGAGGTGAAGATGATAGGAGAAGAGGCGGCGATGGTGAGGGTTCAGTCGGAGAGTGGGACCCACCCTGGTGCGAAACTGCTGAATGCATTGCGGGAATTGGAGTTTCAAGTGCAGCATGGAAGCATGTGGTGCGTCAACGAGAGCAGCATCATGCTCCAACACGTTCTTGTGAAGCTTCCAGAAGGGATCACGATGAGAACTGAACAAGCGCTTAAATCTTCCATTCTAAGCAGATTATTGGATCATCATAATCAATAA 1485 0.4997 MEDMIISPSSSSSLVSIPQENTPTLQQKLHFLLQNQLPEWWVYGIFWHTTNDDNGNLFLSWGDGHFQGAKDASSPRLIPHYPISVTDRCRKFNNNSNNNNDGEWFYMMSLTRTFPMGEALYSSLPGKAFGSGSPIWLNGDLQFCDCDRAKEAYMHGIRTLVHIPTTDGVLEMGSYDLITENWALLQQTKSLFGSQHQQLNPIQFFDDQNISFADIGIIAGVQEEDNSHEEDAVRKRKETEALNNKKKNKDHSSMGKFRSSRQSSFVDSEHSDSDCGAPMAAAEKRLPKKRGRKPGIGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYINELKAKIEELETQVQKESSMNNNNKKVKVETGDSMDNQSTTTTSSVDQNNNENEAAEVQVEVEVEVKMIGEEAAMVRVQSESGTHPGAKLLNALRELEFQVQHGSMWCVNESSIMLQHVLVKLPEGITMRTEQALKSSILSRLLDHHNQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00218 494 CDD bHLH_AtAIB_like 297 369 - -
Arst6g00218 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Arst6g00218 494 MobiDBLite consensus disorder prediction 358 401 - -
Arst6g00218 494 SMART finulus 305 354 IPR011598 GO:0046983
Arst6g00218 494 Gene3D - 297 366 IPR036638 GO:0046983
Arst6g00218 494 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 192 IPR025610 -
Arst6g00218 494 Coils Coil 338 365 - -
Arst6g00218 494 MobiDBLite consensus disorder prediction 223 310 - -
Arst6g00218 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 362 IPR036638 GO:0046983
Arst6g00218 494 PANTHER MYC 13 487 IPR045084 GO:0003700|GO:0006355
Arst6g00218 494 MobiDBLite consensus disorder prediction 293 310 - -
Arst6g00218 494 MobiDBLite consensus disorder prediction 223 256 - -
Arst6g00218 494 MobiDBLite consensus disorder prediction 359 401 - -
Arst6g00218 494 Pfam Helix-loop-helix DNA-binding domain 303 348 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00218 Arst-Chr6 1872580 1874620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00218 1 488 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.161 1.05e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g00218 bHLH-MYC_N 1.1e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00218 - K13422 adu:107491832 947.577