Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst6g00215 | ATGTCCGAGGGTGCGGAGGTCAATGAGCGTGTCGACATTGATGAGGAGAATTATATGGAAGAGATTGATGATGATGTTGAAGAACAGATAGATGACCATGGACAAGAAGCACCTGAACCTCCACATGAACATAAGGGGTCACCTGCTAAGGCTGCTGCTAAAGATCAGTTGCCTGAACAAGAACAAGAAAGAAGTGACACTGCTGCAGAAATTCTCCAAGATGGGCAGAAACCATCTTCTGTCAATGAAGAAGATGAGGAGAAGGAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTCATTGGTGGGCTTCCTCGCGATGCCAATGAAGATGATTTGAAGGCATTGTGCGAGCCAATGGGTGACGTTCTAGAGGTGCGACTAATGAAGGACAAGGACACCGGCGAAAACAGGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGTAGCACAAAAGGCCATTGAAGACATACACAACAAGGAATTTAAGGGCAAAACCTTGAGGTGTTCACTGTCTGAAACAAAACACAGATTGTTCATTAGTAACATTCCAAAGACTTGGACGGAGGATGAGTTCAGGAAACATGTCGAGGCTGTTGGTCCGGGTGTTGAAAACATCGAGCTCATCAAGGACCCCCAAAACCCCACTAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGACTATTCGCGGCAAAAGATGTCAATTGCAAGTTTTAAGCTGGGTGGTAATACCCCAAATGTCACATGGGCAGATCCAAAGATCTCACCTGATCATTCTTCATCTTCACAGGTTAAAGCTCTATATGTTAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAAGAACTATTCCGGCGACATGGAGAAGTGACAAAAGTGGTCATGCCACCTGGTAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGCGGTCAAGTGTATTGAAAGCTGTCAAAGATACAGAAAAATATGAAATTAATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAGAAAAGCTGAAGTTAGTTATGCCTACAATCCTGTACTTCATCCAAGCCATCTTATACATCCCGGATATGGTAGTTTTTCTGGAAACGTTTACGGCTCTTTAGCTGCAGGATATGGTGTTGCTACAGGTTATCAACAGGTATTTAATTTCNNNNNNNNNNNNNNNNNNNNNNNNATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATCGGCTATGTCCTTCAACAGCCTGGTGTACAGGCACCACCGGCCCGACCTCGCAGAACTGATCGGAACAATGGTCCAAGTGGTCAACCGGGCCGAGCAGGAGGTGGTGGCAGCGAAGAAAGCAACCGTAATAGAAGGTACCGACCCTATTAG | 1434 | 0.4358 | MSEGAEVNERVDIDEENYMEEIDDDVEEQIDDHGQEAPEPPHEHKGSPAKAAAKDQLPEQEQERSDTAAEILQDGQKPSSVNEEDEEKEKHDELLALPPHGSEVFIGGLPRDANEDDLKALCEPMGDVLEVRLMKDKDTGENRGYAFVAFKTKEVAQKAIEDIHNKEFKGKTLRCSLSETKHRLFISNIPKTWTEDEFRKHVEAVGPGVENIELIKDPQNPTRNRGFAFVLYYNNACADYSRQKMSIASFKLGGNTPNVTWADPKISPDHSSSSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSVLKAVKDTEKYEINGQVLEVVLAKPQTDRKAEVSYAYNPVLHPSHLIHPGYGSFSGNVYGSLAAGYGVATGYQQVFNFXXXXXXXXMQMVPMVLPDGQIGYVLQQPGVQAPPARPRRTDRNNGPSGQPGRAGGGGSEESNRNRRYRPY | 477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst6g00215 | 477 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 8 | 182 | - | - | |
| Arst6g00215 | 477 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
| Arst6g00215 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 182 | 264 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 180 | 267 | IPR035979 | GO:0003676 | |
| Arst6g00215 | 477 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
| Arst6g00215 | 477 | MobiDBLite | consensus disorder prediction | 79 | 96 | - | - | |
| Arst6g00215 | 477 | Gene3D | - | 8 | 182 | IPR012677 | - | |
| Arst6g00215 | 477 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 183 | 263 | - | - | |
| Arst6g00215 | 477 | MobiDBLite | consensus disorder prediction | 433 | 477 | - | - | |
| Arst6g00215 | 477 | MobiDBLite | consensus disorder prediction | 33 | 70 | - | - | |
| Arst6g00215 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 102 | 180 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | Gene3D | - | 183 | 263 | IPR012677 | - | |
| Arst6g00215 | 477 | SMART | rrm2_1 | 103 | 176 | IPR003954 | GO:0003676 | |
| Arst6g00215 | 477 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 8 | 441 | - | - | |
| Arst6g00215 | 477 | CDD | RRM_SF | 104 | 176 | - | - | |
| Arst6g00215 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 354 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 99 | 356 | IPR035979 | GO:0003676 | |
| Arst6g00215 | 477 | Gene3D | - | 265 | 364 | IPR012677 | - | |
| Arst6g00215 | 477 | SMART | rrm1_1 | 183 | 260 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | SMART | rrm1_1 | 278 | 350 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | SMART | rrm1_1 | 103 | 176 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 104 | 174 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 184 | 245 | IPR000504 | GO:0003723 | |
| Arst6g00215 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 347 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst6g00215 | Arst-Chr6 | 1831019 | 1834961 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst6g00215 | 104 | 372 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 27.907 | 2.69e-18 | 85.9 |