Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00193 ATGGAGGGTGGGAATAGGGTTCCGGGGTCAGGGGAGGGTGACCCTTCTTACTGGCTGGACGCCTGTGAGGACATATCATGTGATTTCATTGATTTTGATGTGTCTTCAATTGTGTCTGAGCAGCCTGACAACGCTTCCAACCAGGATTTCTTTGGTGGGATTGATCGAATCCTTGATAGCATAAAGAATGGTGGTGGCCTCCCGCTTGATGCCGAATCCAATTCCAATGCTACACAACAACCATGAGTTTTGGTTGGTTGTTTTGTGGAAAACGGAGGCCTGAGCAGAGGGCGCGATCAGTTGAGGGAATATGATGTTGATGGTGAAGAGAGATACTGCAAAAGGGCGAGGCTTGGCAACTATAAGAATGACAGGCATTATTCTGGTAGAGTTAATTATCAATTCAAGGAGAAAGAGAGGTGTTTTAATAGGAAGAGGCCTCGGGATAGTAGAGATGAGATTGATGTTAGGAGGGACAAAGATAGTAGCAGGAAAAAAGAACATTATGGCAATTGTGGCTGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAGCAGAGGGGTTACTGGGAGAGGGATAAATTGGGTTCTAATGACATGGTTTTTCGCGTGGGCACTTGGGAAGCCGGTAGGGATCGAGAAGAGAAAATGGCTAATGACACAAAACAGGAAAGCAATGGAAAGCTTGACAAGACATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAGAAAGCTAGACAGTATCAATTGGATGTTCTTGAGCAGGCAAAGACGAAGAATACTATAGCTTTTCTTGAAACCGGAGCAGGGAAGACCCTCATTGCAGTTCTTCTCATCAAAAGTATACACGAGAGTTTGCAAAAGCAAAATAAAAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTCCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGCTATCAAGTGGGTCATTACTGTGGAGAAATGGGTCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGACACTAAACATGTCTTAGTCATGACAGCTCAAATTCTTCTGAACATCTTGAGGCATAGCATCATTAAAATGGAAGCAATCAATCTCCTAATTCTTGATGAGTGCCATCATGCTGTTAAGAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCACACAACTCCTAAAGAGAACAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTAAACTTGAAGGGAGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGAAATCTTGAGAGCAAGCTGGATTCAATAGTTTGTACCATTAAAGATCGCAAGGAGCTGGAGAGACATGTGCCCATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAGCCGGCAGTTTATGTTATCTACATGAGCAAATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCGAGTTCAAGGAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGCGCAAAAGAGGAGCTGCGACAAGTATATGGTGTTTCTGAGAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGGCAGTGGTGTGCATTTAAGGTTGCCCAATCTTTTCTAGCAGCTTTGCAGAATGATGAAAGGGCTAACTACCAACTAGATGTCAAGTTTCAGGAATCTTATCTTAGCAAAGTTGTCTCTCTTCTGAAATGTCAGTTGTCAGAGGGTGCAGTTTCTGACAAACATGCTGAAGTTGATGACTCAAAGCATGAAACAACTTGCAATGGGACTGAACCTGAAGAGATTGAGGAAGGAGAACTTCCAGACAGTCATGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGAGCAGCTGTAGCTGATGGGAAGGTGACCCCCAAGGTGCAGGCACTCATCAAAATACTACTGAAGTATCAGAACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCGAAGGTCTTTGCAGAGCTCCCATCTCTTAGTTTTGTGAAATGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGAGGGTTACATTGTTAGTTGCTACTAGTGTTGCTGAAGAAGGGCTTGATATCCGGCAATGCAATGTCGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCTAGGGGTCGTGCTAGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTTAGGAATGCAAGAAACAGCGAGGAGACCTTACGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGATTGATTTCAGTAGATACCCGACCGGGAACAGTTTACCAGGTCAAGTCAACCGGGGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGTTCCCAACTACCAAGCGACAGGTATTCAATTCTTCGCCCTGAGTTTATCATGGAGAAGCATGAAAAACCAGGATGTCCCACTGAATATTCTTGCAAGCTTCAACTACCTTGTAATGCGCCATTTGAAAATCTTGAGGGTCCTATCTGCAGTTCAATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCGGACAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGGGATCCACTTCCAGGGACTGCTAGACACAGGGAGTTCTATCCTGAAGGTGTGGCTGACACACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTACAACAATTCCAAATTGTTTCATCTTTATATGTATTCCGTGGAGTGCGAAAATGTAGGAATTTCAAAGGATCCGTTCTTAACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATCAGTGAGAGTCAGTTGGCGACCCTGAAAAGCTTTCATGTACGGTTAATGAGCATTGTCTTGGATGTGGATGTTGAACCTTCTACCACTCCTTGGGATCCCGCAAAAGCATATTTATTTGTCCCAATGATTAGCGATAAGTCTGTAGATCCTGTGAAACAAATTGACTGGTTTATGGTCGAGACAATAATTGGATCGGATGCATGGAAAAATCCCCTCCAGAAGGCTCGGCCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGAGACAGAAGGGAGTATGGATTTGGAAAATTGCGTCATGGCATGGCGTTTGGGCAAAAAGCACATCCAACCTATGGAATCAGAGGAGCTGTAGCCCAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATCCAAACACAAAAACATATCAGTTTGACGACCAAAGGAAAATTGATGATGGCGGATACTTGTACTAACGCAGAGGATCTGGTTGGGAAAATTGTAACTGCTGCACACTCTGGGAAGAGGTTTTATGTTGATTCAATACGTTATGATATGTCTGCAGAAGATTATTACAAGCAAAAGTATGGGGTTGATTTGATTTACAAGCATCAACCGCTTATAAGAGGGCGTGGTGTGTCATACTGTAAGAATCTTCTTTCCCCTCGATTCGAACACAGTGAAGCACATGAAGGAGAATCTGAAGAATCTCATGACAAAACATATTACGTGTTCCTTCCTCCTGAACTATGCCTAGTACACCCTCTTCCTGGATCACTTGTTCGGGGTGCCCAGAGATTGCCTTCAATCATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTTAGGAATATGATAAATTATCCTGTGCAGGCTTTGAAGATCTTGGAGGCCTTGACTGCTGCATCTTGTCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTCGTTAGTCGATTTCTTTTCCTAAAATACCCGCAGAAACATGAGGGCCAACTTACTAGGATGAGGCAACAAATGGTCAGCAACATGGTTTTATATCAGTATGCATTAAGTAAAGGCCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCAAGATGGGCGGCTCCTGGGGTGCTGCCTGTCTTCGATGAGGATACCAAGGATGGAGAGTCAACTTTATTTGACCAGGATACATCCATTTCTAACACTGAGAGAATGGATTGTCACACTGATGAATATGAAGATGAGCTGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTACTGTCCAGCAAGACACTTGCTGATGTTGTGGAAGCACTCATTGGTGTATATTATGTCCAAGGAGGTAAGCGTGCCGCTAACCACCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGCTGATGAGATGGACTGTGCAAGAAAGCCTTTCAATGTTCCAGAGAGCATACTTAGGAGTGTTGATTTTGATGCATTAGAAGGTGCTTTGAATATGAAGTTTAAAGACAGGGGGCTTCTGGTAGAAGCCATTACTCATGCGTCCAGACCATCATCAGGAGTATCCTGTTATCAGCGGTTGGAATTTGTTGGTGATGCAGTTTTGGACCATCTTATTACCAGGCATTTGTTTTTCACTTACACAAATTTGCCACCGGGACGATTGACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCTCGTGTTGCAGTTAAACACAATCTTCATGTGCATCTCCGACATGGGTCTAGTGCCTTAGAAAAGCAGATCAAAGAATTTGTCAAGGAAGTTCAGGATGAATTGTCAAAACCGGGATTTAACTCCTTTGGCCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGCTCCATTTTTCTTGATAGTGGAAGGGACACTACTCTCGTTTGGAAGGTTTTTCAGCCTCTATTGCATCCCATGGTTACACCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGCTTAGAATACAGAGCAAGTCGTGTTGGCAATCTGGCCACTGTTGAAGTATTCATTGATGGCGTGCAAGTTGGGGCCGCTCAAAATCCACAAAAGAAAATGGCTCAGAAATTAGCTGCCAGAAATGCCCTAGCTGCTTTGAAAGAAAAGGAGGTGGCAAAGAATCAGAAGAATGATGAAAATGGGAAAAAGAATGGAAACCAAACATTTACCAGACAAACATTAAACGATATTTGTTTGCGAAGAAATTGGCCTATGCCATTCTATCGATGTGTGAATGAGGGTGGTCCAGCACATGCGAAGCGTTTCACATTTGCGGTGCGCGTCAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCCAGTGTCAAGAAGGCCAAAGACTCTGCTGCTGTTCTTCTCTTAGAACTACTAAATAAATTATACTCATGA 5661 0.4386 MEGGNRVPGSGEGDPSYWLDACEDISCDFIDFDVSSIVSEQPDNASNQDFFGGIDRILDSIKNGGGLPLDAESNSNATQQPXVLVGCFVENGGLSRGRDQLREYDVDGEERYCKRARLGNYKNDRHYSGRVNYQFKEKERCFNRKRPRDSRDEIDVRRDKDSSRKKEHYGNCGWRDVRDRDWRDREQRGYWERDKLGSNDMVFRVGTWEAGRDREEKMANDTKQESNGKLDKTSEEAKERVPEEKARQYQLDVLEQAKTKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELERHVPMPSEVVVEYDKAGSLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAFKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKHAEVDDSKHETTCNGTEPEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGCPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADTLKGEWILSGKDAYNNSKLFHLYMYSVECENVGISKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFRGSIDISESQLATLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMISDKSVDPVKQIDWFMVETIIGSDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKAHPTYGIRGAVAQFDVVKASGLVPNRDAIQTQKHISLTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAEXDYYKQKYGVDLIYKHQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEESHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLRNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESTLFDQDTSISNTERMDCHTDEYEDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVQGGKRAANHLMKWIGIQIEFDPADEMDCARKPFNVPESILRSVDFDALEGALNMKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGSIFLDSGRDTTLVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRVGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKNQKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00193 1887 CDD RIBOc 1347 1527 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 Gene3D Ribonuclease III domain 1328 1523 IPR036389 GO:0004525|GO:0006396
Arst6g00193 1887 SMART ultradead3 242 445 IPR014001 -
Arst6g00193 1887 MobiDBLite consensus disorder prediction 930 954 - -
Arst6g00193 1887 SMART PAZ_2_a_3 1188 1330 IPR003100 GO:0005515
Arst6g00193 1887 FunFam Endoribonuclease dicer-like protein 241 481 - -
Arst6g00193 1887 CDD DSRM_DCL_plant 1815 1876 - -
Arst6g00193 1887 ProSiteProfiles Ribonuclease III family domain profile. 1349 1509 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 FunFam Endoribonuclease dicer-like 1 1546 1720 - -
Arst6g00193 1887 Pfam Helicase conserved C-terminal domain 649 766 IPR001650 -
Arst6g00193 1887 FunFam Endoribonuclease dicer-like 1 640 802 - -
Arst6g00193 1887 SUPERFAMILY dsRNA-binding domain-like 1681 1804 - -
Arst6g00193 1887 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 652 813 IPR001650 -
Arst6g00193 1887 Gene3D - 639 805 IPR027417 -
Arst6g00193 1887 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1725 1788 IPR014720 -
Arst6g00193 1887 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1809 1882 - -
Arst6g00193 1887 Gene3D - 1723 1801 - -
Arst6g00193 1887 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 841 936 IPR005034 GO:0016891
Arst6g00193 1887 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 430 IPR014001 -
Arst6g00193 1887 CDD SF2_C_dicer 646 776 - -
Arst6g00193 1887 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1809 1884 IPR014720 -
Arst6g00193 1887 MobiDBLite consensus disorder prediction 1789 1808 - -
Arst6g00193 1887 Pfam Ribonuclease III domain 1363 1509 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 Pfam Ribonuclease III domain 1586 1699 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 MobiDBLite consensus disorder prediction 213 240 - -
Arst6g00193 1887 ProSitePatterns Ribonuclease III family signature. 1586 1594 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 FunFam Endoribonuclease dicer-like 1 836 937 - -
Arst6g00193 1887 Pfam Dicer dimerisation domain 841 929 - -
Arst6g00193 1887 SUPERFAMILY RNase III domain-like 1550 1720 IPR036389 GO:0004525|GO:0006396
Arst6g00193 1887 SUPERFAMILY dsRNA-binding domain-like 1813 1883 - -
Arst6g00193 1887 Pfam Type III restriction enzyme, res subunit 248 412 IPR006935 GO:0003677|GO:0005524|GO:0016787
Arst6g00193 1887 SMART DRBM_3 1726 1787 IPR014720 -
Arst6g00193 1887 SMART DRBM_3 1810 1883 IPR014720 -
Arst6g00193 1887 Gene3D paz domain 1202 1304 - -
Arst6g00193 1887 SMART helicmild6 682 768 IPR001650 -
Arst6g00193 1887 Gene3D - 240 484 IPR027417 -
Arst6g00193 1887 ProSiteProfiles Ribonuclease III family domain profile. 1551 1699 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 Pfam PAZ domain 1206 1326 IPR003100 GO:0005515
Arst6g00193 1887 MobiDBLite consensus disorder prediction 927 954 - -
Arst6g00193 1887 FunFam endoribonuclease Dicer homolog 1 1815 1884 - -
Arst6g00193 1887 CDD RIBOc 1567 1722 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 SUPERFAMILY PAZ domain 1192 1303 IPR036085 GO:0005515
Arst6g00193 1887 FunFam Endoribonuclease dicer-like protein 1328 1521 - -
Arst6g00193 1887 Gene3D Dicer dimerisation domain 836 937 IPR038248 -
Arst6g00193 1887 Coils Coil 1779 1799 - -
Arst6g00193 1887 Gene3D Ribonuclease III domain 1548 1722 IPR036389 GO:0004525|GO:0006396
Arst6g00193 1887 ProSiteProfiles PAZ domain profile. 1241 1306 IPR003100 GO:0005515
Arst6g00193 1887 PANTHER DICER-RELATED 260 1792 - -
Arst6g00193 1887 PANTHER DICER-RELATED 260 1792 - -
Arst6g00193 1887 Gene3D - 1815 1885 - -
Arst6g00193 1887 SUPERFAMILY RNase III domain-like 1322 1527 IPR036389 GO:0004525|GO:0006396
Arst6g00193 1887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 780 IPR027417 -
Arst6g00193 1887 CDD DEXHc_dicer 245 444 - -
Arst6g00193 1887 SMART riboneu5 1566 1722 IPR000999 GO:0004525|GO:0006396
Arst6g00193 1887 SMART riboneu5 1345 1529 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00193 Arst-Chr6 1703586 1714401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00193 665 808 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.76e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00193 K11592 - gmx:100811631 3305.38