Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00183 ATGAAGTCACTCACAGTCACAGCCAGTGTTTTGAACCCCACAAATCAGCCACCAGTCAACAAACTCCACTTCTTCCACTCTCACTCTCTCTCAATCTCACTCTTCTTCCCACACACATCATCAAACCTAAAATGCCACCATCAAAAGCCAATCATCACAGCATGCTCTTCTTCTTCTTCGATCGAAATCGACATGGTGAAGAACAACCAAGGAATCTACACCCCTAAGCACCCCAAAGTAGTCGTCCTCTGGGACCTGGACAATAAGCCCCCACGAGGACCCCCATACGACGCCGCACGTTCCCTCACACGCCTCGCAACTCACTTTGGCCACGTCGTCGACATCTCTGCCTATGCCAATCGCCACACATTCATCCACCTCCCGCAGTGGGTCCTACAGGATCGCCGCCAGAGAAAGCACCTCGACGTGCTGGAACGGAAGGGCCTGGTGGTGCCGTCGGAGCCCTACAGGTGTTCCGTCTGCGGGAGAAAGTGTCGCACCAATCTGGATCTGAAAAAGCATTTCAGGCAGTTGCATGAACGAGAGAGGCAGAAGAAGCTTAATCGGATGAGGTCCTTGAAAGGGAAGAAACGGCAGCGTTTTAAAGAGAGGTTTATTCAGGGGAATGAAAAGTATAATGAGGCTGCTAGGTCTCTCATTAGGCCCAAGGTTGGTTATGGGCTAGCTTCAGAGCTGAGGAGGGCTGGGGTATATGTGAAGACTGTGGAGGATAAGCCTCAGGCTGCAGATTGGGCATTGAAGAGGCAGATGCAGCACTCAATGACCAGGGGGATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTCACAGAGATGTTGAGGAGAGCAAGAGAGAGGGAATTGGGGACAGTGGTGGTTGGGGATTGGGATAGGGCACTGGGGAGGCAAGCCGATTTGTGGTTTCCTTGGATTGATGTTGAGAATGGGAATGTCTCGGAGAAGGATCTGGTGATTGAGAAGAACAGGAGTAGAGCTCAAAGGGATGGTTTTGTCGTGGAAGAAGATGATGATGGGTTTTTTTCATTGTCGAGCTTTGACAGTGGTGGTGGTCATGGGAGTAGTGATTTGGATGAGCTTGTAGATGAACTTGCAGCAGTGAGGACTGATTTTACTGCGACAATTTCAGATGAGGATGAAGACGATTACATGTTGGGGAGTAGTGAGGATGAGTACATAGAAGATTATGATGAAGACAGTGATCAAGAAGATGATGGGTTCTATTGA 1248 0.4936 MKSLTVTASVLNPTNQPPVNKLHFFHSHSLSISLFFPHTSSNLKCHHQKPIITACSSSSSIEIDMVKNNQGIYTPKHPKVVVLWDLDNKPPRGPPYDAARSLTRLATHFGHVVDISAYANRHTFIHLPQWVLQDRRQRKHLDVLERKGLVVPSEPYRCSVCGRKCRTNLDLKKHFRQLHERERQKKLNRMRSLKGKKRQRFKERFIQGNEKYNEAARSLIRPKVGYGLASELRRAGVYVKTVEDKPQAADWALKRQMQHSMTRGIDWLVLVSDDSDFTEMLRRARERELGTVVVGDWDRALGRQADLWFPWIDVENGNVSEKDLVIEKNRSRAQRDGFVVEEDDDGFFSLSSFDSGGGHGSSDLDELVDELAAVRTDFTATISDEDEDDYMLGSSEDEYIEDYDEDSDQEDDGFY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00183 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 184 IPR013087 -
Arst6g00183 415 ProSitePatterns Zinc finger C2H2 type domain signature. 158 179 IPR013087 -
Arst6g00183 415 MobiDBLite consensus disorder prediction 385 415 - -
Arst6g00183 415 Coils Coil 176 196 - -
Arst6g00183 415 Gene3D - 73 313 - -
Arst6g00183 415 SMART c2h2final6 156 179 IPR013087 -
Arst6g00183 415 CDD PIN_LabA-like 166 296 - -
Arst6g00183 415 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 38 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00183 Arst-Chr6 1602617 1607518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00183 20 351 C2H2 Transcription Factor Family AT5G52010 66.766 1.00e-158 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst6g00183 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00183 - - adu:107495834 729.169