Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00149 ATGAAAGTAGATGAAAGTTCCTGGAGGCATGGATGGCAGGAAAAGGGACTTGAGTGGTGGCTTCACTTTCAACTTTTAAAGGCGTCTTCTAATATTATGCAAGTCGCGATGGGTGACTCGTCGGTGCCAAGTGACAAGTTGGGTGAGTCTCCGGCGGTTGAGTTAACGGGCAAGATCATGGTGGTGGCCGTAATAGTGTTGTTCATGGTGGTTGTGTTCGTGCTGTTCCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGGAGAGAGCAACATTCCCCAACCCAGAAGGCGGCGGCGGCGCTTTGTGTTTGCTCCTGGTCAAGACCCGGCCAGCTCCGGCGGTGTCCGAAGAGGCCTTGAGCCTTCTGTGCTGAGATCCCTGCCGGTGTTGGTTTTCCAGCCGCAAGATTTCAAGGAAGGAATGGAATGTGCGGTTTGCCTTTCGGAGGTTGAAGAGGGAGAAAAGGCGAGGCTGTTACCAAAGTGCAATCATGGCTTCCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCTACTTGCCCCCTCTGCAGAAACCCTGTGACCTCTGCCACCGAATCTTCTTCTGATGCAGCTTTCCCCACAAATGTCTTCGTTTGGGGGAACCAGGCCCAAGTGAGTTCTTCTTTGGAAGAAACTACTACTTCTTCGTCCTCGTCATCTTCAGCTAGCAGCAGTGACAGAGTTCATCATCATGGCGGTGGATCGTTGGTGATTGATATACCAAGCGAGATCACTTCATCTTCTGCAAGCAGGTTTGCAGAAGAAGATGAGATGAAATCTCCCATTACAGGGAGACTGAAATCATTGAAGAGGCTGTTAAGCAGGGACAGGAGGATGAATCCTTCTAGTCCACGTTCTATAGACCTTGAACATGCAACGGGATCAGGGCAGAGCTCTAGCTAG 933 0.5048 MKVDESSWRHGWQEKGLEWWLHFQLLKASSNIMQVAMGDSSVPSDKLGESPAVELTGKIMVVAVIVLFMVVVFVLFLHLYAKWFWWSIGESNIPQPRRRRRRFVFAPGQDPASSGGVRRGLEPSVLRSLPVLVFQPQDFKEGMECAVCLSEVEEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVTSATESSSDAAFPTNVFVWGNQAQVSSSLEETTTSSSSSSSASSSDRVHHHGGGSLVIDIPSEITSSSASRFAEEDEMKSPITGRLKSLKRLLSRDRRMNPSSPRSIDLEHATGSGQSSS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00149 310 CDD RING-H2_EL5-like 144 187 - -
Arst6g00149 310 SUPERFAMILY RING/U-box 125 194 - -
Arst6g00149 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 47 242 - -
Arst6g00149 310 SMART ring_2 145 186 IPR001841 -
Arst6g00149 310 Pfam Ring finger domain 144 187 IPR001841 -
Arst6g00149 310 MobiDBLite consensus disorder prediction 296 310 - -
Arst6g00149 310 MobiDBLite consensus disorder prediction 218 238 - -
Arst6g00149 310 FunFam RING-H2 finger protein ATL3 112 192 - -
Arst6g00149 310 MobiDBLite consensus disorder prediction 260 294 - -
Arst6g00149 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 197 IPR013083 -
Arst6g00149 310 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Arst6g00149 310 MobiDBLite consensus disorder prediction 218 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00149 Arst-Chr6 1380005 1382364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00149 54 290 C3H Transcription Factor Family AT1G53820 39.456 2.03e-57 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00149 6 1380005 1382364 Arst6g00149 6 1380005 1382364 ECH