Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00135 ATGCATATAGCAGGTCAAACGAATACAACTTCAGCGAAATGTCTCATCAACAGCATTTCACGATTCATTCATCTAGTTTCTTGCCATACAGTAAAGCCTACCCCCCTTAAGAAGAACTTTGATAATATGGTTAGTGTGTTGAAGCGTTTGAAACCTGTGCTCGATGATGTTGTGGATCACAATCTCCCTTTGGAGGAAAATCTGTATAGAGAATGCGAGGAATTGGATATGTTGGTTAATGAAGCTAGAGAGCTCATTGAAAAATGGGGCCCAAAGATGAGCAAGATTCGCAGCGTTCTTCGAAGTGGTAAATTGCTGATCAAGTTACAGAGTGCTTCACTTTATATTTGTCGTGTGATTGTTAGATCCCTAAAGTCACCTTCAAATCCTTCAGTTTTGTCCAATCTTCAGCAATATATGCAGGACCTTCAGCATCTTAAGAAGGAGACAGCAGTGGTCTATATAGAAGAAGCACTTAGAAACCAAAGGAATAATGTTCAAACTTCAAATGATCGTCTAAAAGGAATTATTGAGTTACTTCACCTTACATCAAACCAGGAGCTTTTAAAAGAAAGTATTGCTGCGGAAAAGGAAAAGTTGAACACTGAAGTCAATAAAATGAAAGAGGAACTGGATGAAATTAACCAAATTGTGAATCTTGTCTGCAACTTACGCGAGTATGTGTTGAAATTTGAGTGCCGTGAAGTCAAACACGGTGTCTCTATCCCACAATATTTTAGATGTCCTTTATCATTGGAACTTATGTCAGAACCTGTTATTGTGGCTTCTGGTCAAACATACGAGAGGCAATCCATTCAAATTTGGCTTGATCATGGCCTGACTGTTTGTCCCAAGACTCATCAGAGACTTTCCCATACAAATCTTATTCCGAATTATACCGTGAAAGCTATGATAGCAAACTGGTGTGAGGAAAATGCTGTCAAACTTCCCAATAACTCTAAGCCTAAAAGTTCTTACCATGTTTCAACCCCGTCAGATCATTCATTTCCTGAAGATTTTGATCCTGTGTGTAGTTTTGGGTCTTCACATAGTAGCTATTCCACTTCAAAATCGTCCCCTCAAACTGGAAGTGCATTTGAGAAGCAAAATGGTGACGGTTCTTTCAGACTAAGTGGAGAATCAAATGGATGCAGAAGTGGAGAGACAGAAAAGTTTGAGCACTCATCCCCTGAGGCTTCATGTAGTCACAGCAGAAGTGAATCAGTGTCAAGTTCTATTTCTAGCAGTGATTATGTAAACCCAGTTTCAAAAGGGGTGTCAGCCATACCTAATAAGCATCAAAATGTGTTGTGCAGAGAAATCATAAATGAGCATCCTGCAAATAAAGAATCAGGGATTTCTACTCGGTTTTCAGGAAAGCAATCTCAAATCCCTGAATCCAAAATTGTAGTGATGGAGAACGGAAATAATCATAGAAAGAATAATAATATTATTAATAGCCACACGGAAGTTGATTCGGTTCCTGCTTCCAACTTACAGCATGATGAACTAACTACCATATCTCATGTCAACAAGTTGATTGAAGACCTTCAGAGTAAGTCAAATGAGGTGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACCAAGAATAACATGGAAAACCGTGTCATTGTTGGGAAGTGTGGTGCAGTTACACCATTACTTTCACTGCTGTATTCGAATGTGAAGATAACACAAGAACATGCTGTGACAGCTCTTCTGAATTTGTCAATTTACGAGGACAACAAGTCTTTGATTATGGAAGCAGGAGCCATAGAACCACTGATCCACGTTTTGAAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCAGCAGCACTATTCAGCCTCTCCGTAATAGAAAACAATAAGGAAAAAATTGGCCGTTCCAGTGCAGTTAAAGCTTTGGTGGATCTTCTAGCCTCAGGAACACTAAGGGGAAAGAAGGATGCTGCCACTGCTTTATATAACTTATCAATATTTCACGACAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAGTATCTGACTCAGTTATTGGACCCAGCTGACAGAATGGTTGACAAGGCTGTTGCTCTTTTAGCAAATCTCTCAACAATTGCAGAGGGTCGAATAGAAATAACAAGGCAAGGGGGAATTCCCTTGCTAGTTGAAATTTTGGAATCAGGTTCTCAAAGGGGGAAGGAAAATGCTGCTTCTATTCTCTTCCAACTATGCCTTCATAGTTCGAAGTTTTGTACCCTCGTTCTGCAAGAAGGAGCTGTACCACCCCTTGTTGCATTGTCTCAGTCCGGCACGACAAGAGCAAAAGAAAAGGCGCAACAGCTACTCAGTCATTTCCGTAATCAGCGTGAAGTGGCTGCCGGGAAGGGAAGATCATGA 2388 0.4058 MHIAGQTNTTSAKCLINSISRFIHLVSCHTVKPTPLKKNFDNMVSVLKRLKPVLDDVVDHNLPLEENLYRECEELDMLVNEARELIEKWGPKMSKIRSVLRSGKLLIKLQSASLYICRVIVRSLKSPSNPSVLSNLQQYMQDLQHLKKETAVVYIEEALRNQRNNVQTSNDRLKGIIELLHLTSNQELLKESIAAEKEKLNTEVNKMKEELDEINQIVNLVCNLREYVLKFECREVKHGVSIPQYFRCPLSLELMSEPVIVASGQTYERQSIQIWLDHGLTVCPKTHQRLSHTNLIPNYTVKAMIANWCEENAVKLPNNSKPKSSYHVSTPSDHSFPEDFDPVCSFGSSHSSYSTSKSSPQTGSAFEKQNGDGSFRLSGESNGCRSGETEKFEHSSPEASCSHSRSESVSSSISSSDYVNPVSKGVSAIPNKHQNVLCREIINEHPANKESGISTRFSGKQSQIPESKIVVMENGNNHRKNNNIINSHTEVDSVPASNLQHDELTTISHVNKLIEDLQSKSNEVQTAAAEELRLLTKNNMENRVIVGKCGAVTPLLSLLYSNVKITQEHAVTALLNLSIYEDNKSLIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKEKIGRSSAVKALVDLLASGTLRGKKDAATALYNLSIFHDNKARIVQAGAVKYLTQLLDPADRMVDKAVALLANLSTIAEGRIEITRQGGIPLLVEILESGSQRGKENAASILFQLCLHSSKFCTLVLQEGAVPPLVALSQSGTTRAKEKAQQLLSHFRNQREVAAGKGRS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00135 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 316 IPR013083 -
Arst6g00135 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Arst6g00135 795 SMART arm_5 621 661 IPR000225 GO:0005515
Arst6g00135 795 SMART arm_5 662 701 IPR000225 GO:0005515
Arst6g00135 795 SMART arm_5 702 742 IPR000225 GO:0005515
Arst6g00135 795 SMART arm_5 580 620 IPR000225 GO:0005515
Arst6g00135 795 SMART arm_5 539 579 IPR000225 GO:0005515
Arst6g00135 795 FunFam RING-type E3 ubiquitin transferase 493 788 - -
Arst6g00135 795 Coils Coil 190 217 - -
Arst6g00135 795 Pfam Armadillo/beta-catenin-like repeat 541 578 IPR000225 GO:0005515
Arst6g00135 795 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515
Arst6g00135 795 Pfam Armadillo/beta-catenin-like repeat 624 660 IPR000225 GO:0005515
Arst6g00135 795 Gene3D - 585 792 IPR011989 -
Arst6g00135 795 MobiDBLite consensus disorder prediction 401 419 - -
Arst6g00135 795 FunFam RING-type E3 ubiquitin transferase 238 315 - -
Arst6g00135 795 Gene3D - 453 584 IPR011989 -
Arst6g00135 795 Coils Coil 65 85 - -
Arst6g00135 795 CDD RING-Ubox_PUB 243 295 IPR045210 -
Arst6g00135 795 MobiDBLite consensus disorder prediction 351 419 - -
Arst6g00135 795 PANTHER U BOX DOMAIN-CONTAINING 35 783 - -
Arst6g00135 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Arst6g00135 795 SUPERFAMILY RING/U-box 240 317 - -
Arst6g00135 795 Coils Coil 510 530 - -
Arst6g00135 795 SUPERFAMILY ARM repeat 506 782 IPR016024 -
Arst6g00135 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Arst6g00135 795 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Arst6g00135 795 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Arst6g00135 795 Pfam U-box domain 242 312 IPR003613 GO:0004842|GO:0016567
Arst6g00135 795 MobiDBLite consensus disorder prediction 386 400 - -
Arst6g00135 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Arst6g00135 795 MobiDBLite consensus disorder prediction 351 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00135 Arst-Chr6 1284396 1288954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00135 13 795 U-box Gene Family AT3G54790 53.038 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00135 - - gmx:100804684 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00135 6 1284396 1288954 Arst6g00135 6 1284396 1288954 ECH