Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00052 ATGGAAGAAGTTCAAGCAGCTCAACCTCAATCACTCGGGGAACTTCCAGCAGAATATAGCGTCCCGCCGAAAGTTGATTCTGAAGTTGAAGTCCTTCACGAGAAGGTCACTAAGCAAGTAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTTATTCATTACAGGGGTTGGTCTGAAAGCACCCAGCACAAGTTTGAAGACACGTGGCAAGAACAGCGACCAATTGAGATGGTATTAGGAAAAGAAAAGAAAGAAATGACTGGCTTGGCCATTGGTGTGGCAAACATGAAAGATGGTGAGCGTGCATTGCTACGTGTGGGTTGGGAATTAGGATATGGCGAGGAAGGAAGTTTTTCTTTCCCCAATGTTCCTCCCAGGGCAGATTTAGTTTATGAAGTCGAGCTTATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGCGATATGACTGTGGAGGAAAGGATTGGTGCAGCAGATCGTAGAAAGATGGATGGAAATGTTTTGTTTCAGCAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCATGTTTCAGCTGTTTGGGAAATATAGGGATATGGCTTTGGCTGTAAAGAACCCATGCCATCTTAACATGGCAGCTTGTCTGATTAAGCTGAACCGTTACGAAGAAGCTATAGGACAATGTACAATTGTACTGACTGAGGATGAAAACAATGTCAAAGCTCTATTTAGGAGAGGCAAGTCTAGGGCAGCACTTGGGCAAACAGATGCTGCCAAGGAAGATTTTCAAAAGGCACGCAAGTATGCTCCTGAAGACAAAGCCATTGCAAGAGAATTAAGGTTGCTTGCTGAACACGACAAAGTTGTTTACCAAAAGCAGAAAGAACTATACAAAGGAATCTTTGGACCAAGACCAGAACCAAGATCTAGTAATATGCGAAGTGGTAACTTGCTGATTCTCATTTGGCAGTGGTTGCTTTCACTATTTTATGGCCTTGTTAATCTCTTCAAGCGTAAAAGCCCCAAATCTGACTAA 1065 0.4272 MEEVQAAQPQSLGELPAEYSVPPKVDSEVEVLHEKVTKQVIKEGHGQKPSKYSTCFIHYRGWSESTQHKFEDTWQEQRPIEMVLGKEKKEMTGLAIGVANMKDGERALLRVGWELGYGEEGSFSFPNVPPRADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNVLFQQEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCTIVLTEDENNVKALFRRGKSRAALGQTDAAKEDFQKARKYAPEDKAIARELRLLAEHDKVVYQKQKELYKGIFGPRPEPRSSNMRSGNLLILIWQWLLSLFYGLVNLFKRKSPKSD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00052 354 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 79 324 IPR039663 -
Arst6g00052 354 SUPERFAMILY FKBP-like 23 150 - -
Arst6g00052 354 Pfam Tetratricopeptide repeat 250 282 IPR013105 -
Arst6g00052 354 SMART tpr_5 215 248 IPR019734 GO:0005515
Arst6g00052 354 SMART tpr_5 164 197 IPR019734 GO:0005515
Arst6g00052 354 SMART tpr_5 249 282 IPR019734 GO:0005515
Arst6g00052 354 MobiDBLite consensus disorder prediction 1 20 - -
Arst6g00052 354 ProSiteProfiles TPR repeat profile. 249 282 IPR019734 GO:0005515
Arst6g00052 354 Gene3D - 20 145 IPR046357 GO:0003755
Arst6g00052 354 FunFam Peptidylprolyl isomerase 149 277 - -
Arst6g00052 354 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 141 IPR001179 GO:0003755
Arst6g00052 354 SUPERFAMILY TPR-like 156 295 IPR011990 GO:0005515
Arst6g00052 354 Gene3D Tetratricopeptide repeat domain 146 277 IPR011990 GO:0005515
Arst6g00052 354 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 144 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00052 Arst-Chr6 652854 656376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00052 29 330 Calmodulin-binding Proteins AT5G48570 31.715 3.96e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00052 - - gmx:100790587 600.897