Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04648 ATGTCGATGGTGCTGAGGAGGGTGTGGGAACTGGTGTCAAGCACGTCGAGAGGGAACGTGGATGGGAGCGCAGCAGAGGCGTGTTCCCGATCCGATTTGGGAGAGCTGGAGCAGCTGCCGGGAGACATATTGTTGCAAATCCTGAGGGAGTTGGGGCCCAAGGATGCAGCCAAGATGAGCTGCGTATGCAAGGCTCTCAGATGCCTCGTTTTCGACAATCGTTTGTGGGTTCACTTCCTTCAGACCCATCACCCCGACCCTTCTTCCGACTCTCTCTTCTTTGCTGAGGCCACCTTGAGCTATGGCTACCCTCTCCCTCTTCCACCCTTCCATGCCCGCACCCCCCAGCTCTCCTTCAAGCATATTTATGGCCAACGAGCACGCATTCCTGGTTCCGTTATCATTGATGGCGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAATATGCCTGTCCATCCGGCCGATCAGCAACGTTTTTGGAATTCGGTAACATCGAGTCTCCAATGTATACTAGACTACGACATTTTTTTGCAACTATATATAACAGGATGCAGGTGAAACCAAATACACAACCTGTTATTGTTTCCGTACCAATATGTCATTATGATGATACTGAATCAGCTAAAGCATCAAGACGGCAGCTTAAAGAAGCAATATATTCTGCCCTGTTTGACATGAATGTTCCCGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTTTGCTGCAAAACGTACTTCTGGAATAGCTGTTAATATAGGGTTTCAAGTCACATCTGTAGTTCCAATTTTTAATGGTAAAGTGATGCGCAGTGTGGGCGTGGAAGTTGTGGGACTGGGAGCACTAAAACTTACAGGATTTCTGAGGGAGAAGATGCAACTCAACAACCTAAATTTTCAGTCTTTATACACTGTCCGCACATTGAAAGAGAAGCTGTGCTATGTTGCTCTTGTATTCCAGCCTCATCTTGCTGGAGTGCAAGCAATGGGTTTGCACCAGGCCATAGCTCTTTGCATGGAGCATTGCCATTCTGTGGAATTAGCAGGTGACAGTGATTGGTACAAGACTGTAGTTTTATCAGGGGGTTCTGCATGCCTACCAGGTTTGGCAGAAAGGTTAGAGAAGGAACTAAAGGCCTTACTTCCTCCCTACATATTCAATGGAACCAGAGTCATACCTCCTCCATATGGTGCCGATACTCCTTGGTTTGGAGCAAAGATCATTGGCAATCTGAGCACATTTCCTGGCCCATGGTGTGTGACAAAGAAACAGTTCCGACAGAAGCCGAGACTCAACCTCATTTGGTGA 1311 0.4775 MSMVLRRVWELVSSTSRGNVDGSAAEACSRSDLGELEQLPGDILLQILRELGPKDAAKMSCVCKALRCLVFDNRLWVHFLQTHHPDPSSDSLFFAEATLSYGYPLPLPPFHARTPQLSFKHIYGQRARIPGSVIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNTQPVIVSVPICHYDDTESAKASRRQLKEAIYSALFDMNVPAVCAVNQATLALFAAKRTSGIAVNIGFQVTSVVPIFNGKVMRSVGVEVVGLGALKLTGFLREKMQLNNLNFQSLYTVRTLKEKLCYVALVFQPHLAGVQAMGLHQAIALCMEHCHSVELAGDSDWYKTVVLSGGSACLPGLAERLEKELKALLPPYIFNGTRVIPPPYGADTPWFGAKIIGNLSTFPGPWCVTKKQFRQKPRLNLIW 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04648 436 Gene3D Actin; Chain A, domain 4 280 319 - -
Arst5g04648 436 SMART fbox_2 39 79 IPR001810 GO:0005515
Arst5g04648 436 Gene3D - 24 129 - -
Arst5g04648 436 CDD NBD_sugar-kinase_HSP70_actin 133 283 - -
Arst5g04648 436 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Arst5g04648 436 SMART actin_3 130 426 IPR004000 -
Arst5g04648 436 PANTHER ACTIN 174 318 IPR004000 -
Arst5g04648 436 SUPERFAMILY F-box domain 25 126 IPR036047 GO:0005515
Arst5g04648 436 Gene3D - 237 279 - -
Arst5g04648 436 Gene3D - 176 236 - -
Arst5g04648 436 Pfam F-box-like 37 78 IPR001810 GO:0005515
Arst5g04648 436 Pfam Actin 179 321 IPR004000 -
Arst5g04648 436 Pfam Actin 328 426 IPR004000 -
Arst5g04648 436 SUPERFAMILY Actin-like ATPase domain 246 427 IPR043129 -
Arst5g04648 436 Gene3D - 402 428 - -
Arst5g04648 436 Gene3D Actin; Chain A, domain 4 320 329 - -
Arst5g04648 436 Gene3D - 330 401 - -
Arst5g04648 436 SUPERFAMILY Actin-like ATPase domain 132 252 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04648 Arst-Chr5 107138748 107142567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04648 179 432 Cytoskeleton Gene Families AT3G12110 27.273 6.43e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04648 K16616 - gmx:100791973 717.613