Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04616 ATGAATACATTTTGTCATGTTCCACCGGGTTTTAGGTTCCATCCAACGGATGAAGAACTCGTTGATTACTACCTTAGAAAAAAAGTTAATTCATGTAGGATTGACCTTGATGTCATCAAAGATGTTGACCTCTACAAAATCGAACCCTGGGATCTTCAAGAGCTATGCAGACTAGGAACAGAAGAGCAAAATGAGTGGTACTTCTTTAGCCATAAAGATAAAAAATATCCAACAGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACAGGGAGGGACAAAGCTATATATTCCAAGCATGACTTGATTGGGATGAGAAAGACTCTCGTCTTCTACAAAGGTCGAGCCCCTAATGGCCTCAAATCTGATTGGATTATGCACGAATATCGTCTTGAAACCGATCAAACTTCGGCTGCTACTCCTCACGAAGAAGGATGGGTTGTGTGTAGAGTGTTCAAGAAGAGAGTGACTTCCATTATGCGTAAGATGAGTGATCATGATTCCCCTTCCTGCACTTGGTATGATGACTCCTCTTTCATGCACCAACAACCAGATCACTTTGACAACTCTTGTTCTTCTTCATCAAAGCACCAACTAATCCCTAATAATAACTGTGATGTCTTCTACCAACAACAAAATAACAACTTGCCTCTTCATCATCTTCCACTTCTTCATCAAACTGCTGCTCTTTCCAATCATAATAATAATCCAATCATGGCACCACCATTTGCTGCTATTAATAATAATGAAACTACTGCTTTTCAAGAACAAGGGAAAAGCTTAATTCATCATCAGGCACTACTCTATGGAAATTTAAATGAAGAGCAAGCTTCTTCTTCAGCTGCTGCTGCTGATTGGAGACTTGTTGACAAGTTTGTTTCATCACAGCTTAGAGAAGATCATCATGTCTCCAAACAAGAATTGATGATGCCAGAAAATAATAATAATAATAATAATGATAATGGTGCCTCAACATCAAACTCAAGCTGTCCAATAATGGACGTGTGGAAATAG 1026 0.3918 MNTFCHVPPGFRFHPTDEELVDYYLRKKVNSCRIDLDVIKDVDLYKIEPWDLQELCRLGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGLKSDWIMHEYRLETDQTSAATPHEEGWVVCRVFKKRVTSIMRKMSDHDSPSCTWYDDSSFMHQQPDHFDNSCSSSSKHQLIPNNNCDVFYQQQNNNLPLHHLPLLHQTAALSNHNNNPIMAPPFAAINNNETTAFQEQGKSLIHHQALLYGNLNEEQASSSAAAADWRLVDKFVSSQLREDHHVSKQELMMPENNNNNNNDNGASTSNSSCPIMDVWK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04616 341 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Arst5g04616 341 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Arst5g04616 341 FunFam NAC domain-containing protein 16 162 - -
Arst5g04616 341 MobiDBLite consensus disorder prediction 312 341 - -
Arst5g04616 341 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Arst5g04616 341 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Arst5g04616 341 MobiDBLite consensus disorder prediction 309 341 - -
Arst5g04616 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04616 Arst-Chr5 106996276 106998907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04616 1 341 NAC Transcription Factor Family AT1G12260 51.657 2.50e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst5g04616 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04616 - - aip:107645037 626.706