Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04609 ATGGATAGGAAAGAAAGCCTTTGTACTAACACCTGGACAGAGCCGTCTTCCTTAACTAATTGGGGAAATGGATTGCAGACAAACTTGTCCCCTGATCCTTCAATTTCAGATTATGGGGAAAGGGTAGAAGCACCTTTCAAAGATTTTAACCAACCCTCTCAAATGCAGTCTCTACTTTCCAAGAATGTCATTAAGATTGCTGATCAAGAAAACTGTCCACCAAATGACTCATCTCAAACCAGTATACTCCAAAATTGGGATGCCAGTGTGATGTTAAATAATCTTTCCTTCTTGGAAAAAAAGGTTCATCAACTTCAGGAGTTAGTGTGCTTGATTGTTAGTAAAAAGGGCCAAACTTTTCGACAGCCTAATGAACTGTTAACTCAGGAACAACAGCTCATTACTGCTGATCTTACATCAATTATTGTTCAGTTGATCTCTTCTGCAGGTAGTCTTCTCCCTTCTGCCAGACATACCCTTACAAATACCAGTCCATTGGTTCAACAGCTTTGCCAGCTTCAGGGGATTACGGTTCCTTTTGCGTCCGGCTCAGGCCAAAGTAGTGTTCAACCACAAAATAATGGGGCAGATAAATTATCTGAGAGCTCACTGAAGAATGGTCTACCAAATAATTGTGATCTGGAGCAAAAGTACAATGTGGAAGAACATGAATTGAAGGATGAGGAAGATGCTGATGATGGAGAAAACCTCCTGCCTGGTTCCTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCCCCACATACACATTTCTGCACAATTTGTGGAAAGGGATTCAAGAGAGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTGCAGCTGCTCTTGCAAAACCTCATAAAGAATCTGAGTCACAACCTAAGCTTATCAAGAGGTATTCTTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAAAAATTTCAACCTCTGAAGACAATATTGTGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAGAATTACACTTGCAGCAGATGCCACATAAAGAAGTTTTCAGTCATGGCGGATCTTAAAACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGACATATTGCTCTTTTCCAAGGCCATACACCGGCCATTCCCATGGAAGACAATAAAAGAACAACAGGCCTTCCAGACCAAGATAATAGCAAAGCAGAAGTTATGAGCTTCAGTTCTGGATTAAATCCTTCAACTGAAAATGGAGTTCAAAATGTCATGGATGTAAAAGGAAACATTGATGATCCTATTACTTGTTTCTCTCCATTGAACTTTGAAGCTAACTTTGGTGGCTTTAATGAATTCACTCAACATCAATTTGATGATGGCTCGGAAGGTTCTTTCTCGTTTCTCATCCCTGGATCTTTCAAATCTGGAGAAGTATCAAGCTCTGATAATGTGGTTTGA 1509 0.4016 MDRKESLCTNTWTEPSSLTNWGNGLQTNLSPDPSISDYGERVEAPFKDFNQPSQMQSLLSKNVIKIADQENCPPNDSSQTSILQNWDASVMLNNLSFLEKKVHQLQELVCLIVSKKGQTFRQPNELLTQEQQLITADLTSIIVQLISSAGSLLPSARHTLTNTSPLVQQLCQLQGITVPFASGSGQSSVQPQNNGADKLSESSLKNGLPNNCDLEQKYNVEEHELKDEEDADDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESESQPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKNYTCSRCHIKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMEDNKRTTGLPDQDNSKAEVMSFSSGLNPSTENGVQNVMDVKGNIDDPITCFSPLNFEANFGGFNEFTQHQFDDGSEGSFSFLIPGSFKSGEVSSSDNVV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04609 502 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Arst5g04609 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Arst5g04609 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 70 474 IPR044300 GO:0010044|GO:0010447
Arst5g04609 502 MobiDBLite consensus disorder prediction 183 212 - -
Arst5g04609 502 Gene3D Classic Zinc Finger 243 318 - -
Arst5g04609 502 SUPERFAMILY beta-beta-alpha zinc fingers 256 284 IPR036236 -
Arst5g04609 502 SMART c2h2final6 258 280 IPR013087 -
Arst5g04609 502 SMART c2h2final6 345 367 IPR013087 -
Arst5g04609 502 SMART c2h2final6 307 340 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04609 Arst-Chr5 106940375 106942692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04609 225 486 C2H2 Transcription Factor Family AT1G34370 69.818 9.77e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst5g04609 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04609 - - gmx:100170687 713.375