Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04590 ATGATTGAGCCAAACTTCGTCGACGACGTAGACTGCGGCAGCTTCTTCGACCACATTGACGACCTCCTCGACTTCCCCGCCGACGACGCTGCCACCGCCGACGCCTCCTTGCCCGTCGCTGCCGCCTGCGCCGGAAACATTGAAACGCCGGCGAGCTTCTGGTCTTCCGAGTCCAACAGCGGTCTGCCGGCCACAGATACAGCCTTTCCCCGCGGTGACGCCGTGACGGACCTCTCGGCGGAGATTTCCGTTCCGTATGAAGACATTGTGCAGTTGGAATGGTTATCCACTTTTGTGGAGGACTCTTTCTCCGGTAGGAGCCTTACCATGAAGAAGGTGGAGCTCCCCACCACCATCACCACAATCAAGGAGGATTTGACTCGTTCACAATTCCGGACATCAAGTCCAGTTTCTGTCCTAGAGAGCAGCAGCTCTTGCTCCAGGGAGAAGGTTGTGGCTCAATGCCCGGAGATTTATATCCCAGTGGTGCCTTGTGGACGTGCGCGAAGCAAGCGGCAGCGCCCGTCGAGCTTCAAGGCACATCCGGTGATGCAACTCATCTCCCCTGCTTCCTCTGTTGGTGAGAACACACAGCCTAATGTCATTCTTAAGGCTTCTTCAGATTCTGAGAATTTCGCGGAGTCTCATCCTGCAATCAAGTTAGCAAAGCAAGCTTCTGGAGAGCACAAGAAGAAAAAGAAAACCAAAGCACCTAATCCTTTAACTGAAGATGATGATCATGATACTAACCAGAATAGTGCGGCAGCTAGGAAATGCATGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCCTGTGGTGTTCGCTACAAGTCGGGCCGCCTCTTCCCCGAATACCGGCCTGCTGCCAGTCCAACGTTCTGCCCTGCCGTGCACTCCAATTCACACAAGAAGGTCCTTGAAATGAGAAACAAATTTGGCTTCTCAACTGATTCAGCTGCTTCTCCTGAACTCATTCCAAACACTTCAAGACTTGGATTGGAATACATGTGA 1047 0.5291 MIEPNFVDDVDCGSFFDHIDDLLDFPADDAATADASLPVAAACAGNIETPASFWSSESNSGLPATDTAFPRGDAVTDLSAEISVPYEDIVQLEWLSTFVEDSFSGRSLTMKKVELPTTITTIKEDLTRSQFRTSSPVSVLESSSSCSREKVVAQCPEIYIPVVPCGRARSKRQRPSSFKAHPVMQLISPASSVGENTQPNVILKASSDSENFAESHPAIKLAKQASGEHKKKKKTKAPNPLTEDDDHDTNQNSAAARKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRNKFGFSTDSAASPELIPNTSRLGLEYM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04590 348 SMART GATA_3 253 303 IPR000679 GO:0006355|GO:0043565
Arst5g04590 348 FunFam GATA transcription factor 248 333 - -
Arst5g04590 348 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355|GO:0043565
Arst5g04590 348 MobiDBLite consensus disorder prediction 222 252 - -
Arst5g04590 348 Gene3D - 253 303 IPR013088 GO:0006355|GO:0008270
Arst5g04590 348 Pfam GATA zinc finger 259 292 IPR000679 GO:0006355|GO:0043565
Arst5g04590 348 CDD ZnF_GATA 258 315 IPR000679 GO:0006355|GO:0043565
Arst5g04590 348 PANTHER GATA TRANSCRIPTION FACTOR 13 325 - -
Arst5g04590 348 MobiDBLite consensus disorder prediction 237 252 - -
Arst5g04590 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 256 316 - -
Arst5g04590 348 PIRSF Txn_fac_GATA_plant 1 340 IPR016679 GO:0003677|GO:0005634|GO:0045893
Arst5g04590 348 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04590 Arst-Chr5 106853979 106857589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04590 19 323 C2C2-Gata Transcription Factor Family AT4G32890 35.505 9.87e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst5g04590 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04590 - - gmx:100815693 412.535