Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04539 ATGAGAAGAAAAGGGAGAAAGCTTCTTAACCTATGTATCTCTCTAAGCTCCCCATTGAAGCCTGAACCACGTGCATCTTCTTTTCATGGTGCTTCTAGAACTTTCTCACCATTTTCCGCTTCTTCTTCTTCCTTCTCCTCCTCCTCCTCCTCCAGCACCGTAACCCCTTGTGTTGAAGATGAAAAGGCTTCGGCAGCGTCCAAGACGCAGAGGGAATCAATGATTTTGGAAGAGTTCAGACAAAGGAAGCTCAAAGGGACTTCATCAAGTTCTTCTTCTCCTGATGGCGGTGCTGAGAAGAAAGAGGGGGAGTCCACTATGGTGGTTTCCAACTTCAGGGAGTTGGGTGTGGCTGAGGAGCTTGCTGAGGTTTTGGAAAAGATTGGTGATGGTGTTCCGAGTGAGATACAATGTGTTGTTATTCCAGCTGTTTTGGAAGGGAAGAGTTTATTGTTGAGTTCACCCGCTGAACCTGACCGAACTTTGGCTTACTTATTGCCCCTTATTCAGCTGCTGCGACGTGGCGAGGTTGGTTTGGATTCAAAGCATCCCAGAGCCATTGTGCTTTGTGCTACGGAGGAGAAAGCTAATGAGTGTTTTAGTGCTGCAAAATATATCATGGAGATTGCGGAAGCGAAGTTGGCAAACCAACGTTCTTCCCCAGATAATGAGCATTCGAATGTCTCAATTGGTCTTCTAGTCGGAACCCCTTCTGAGATTATTCAGTACATTGAAGAGGGAAGTGTTGTCCCTGCTGAAATAAGATATATGGTTTTGGATGATGTAGATTTCATGCTTGGTAGTGGCCTTGGTTCTAACATCCACAAGATTCTCGAACCATTGCAAGATCATGAATCAAAATCCTCTTACAAAAGATTTCAAACCGTCCTAGTTATATCGCCGATCACCGAGGTTTTGGGTGATGAATCCCCCATTGTGAAGCATCTTGAGCGTGATCATGCTGGAAATATTTCTGCAATGTCTTTGGAAATGGATCAAGGAGAAGTGTTCCAATATACACAGTCCCTGGATGCTCTTAGGAAAAAAGTGACAGAAGCCATGGACACCCTTGTGTAA 1077 0.4485 MRRKGRKLLNLCISLSSPLKPEPRASSFHGASRTFSPFSASSSSFSSSSSSSTVTPCVEDEKASAASKTQRESMILEEFRQRKLKGTSSSSSSPDGGAEKKEGESTMVVSNFRELGVAEELAEVLEKIGDGVPSEIQCVVIPAVLEGKSLLLSSPAEPDRTLAYLLPLIQLLRRGEVGLDSKHPRAIVLCATEEKANECFSAAKYIMEIAEAKLANQRSSPDNEHSNVSIGLLVGTPSEIIQYIEEGSVVPAEIRYMVLDDVDFMLGSGLGSNIHKILEPLQDHESKSSYKRFQTVLVISPITEVLGDESPIVKHLERDHAGNISAMSLEMDQGEVFQYTQSLDALRKKVTEAMDTLV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04539 358 Gene3D - 306 358 - -
Arst5g04539 358 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 46 303 - -
Arst5g04539 358 Pfam Poly-adenylate binding protein, unique domain 311 357 IPR002004 GO:0003723
Arst5g04539 358 Gene3D - 54 304 IPR027417 -
Arst5g04539 358 Coils Coil 343 358 - -
Arst5g04539 358 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 278 IPR014001 -
Arst5g04539 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 285 IPR027417 -
Arst5g04539 358 MobiDBLite consensus disorder prediction 29 58 - -
Arst5g04539 358 SUPERFAMILY PABC (PABP) domain 306 357 IPR036053 GO:0003723
Arst5g04539 358 Pfam DEAD/DEAH box helicase 135 299 IPR011545 GO:0003676|GO:0005524
Arst5g04539 358 MobiDBLite consensus disorder prediction 17 105 - -
Arst5g04539 358 SMART poly_2 300 358 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04539 Arst-Chr5 106598758 106600972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04539 311 357 Eukaryotic Initiation Factors Gene Family AT1G49760 51.064 9.28e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04539 - - gmx:100800575 395.586