LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst5g04538	ATGGCGGGAGCTACAGCAAGAACCCTCTTCTTCACCGTCTTTCTCTCTTCCTCCTCCTTCACGCGCCTCTCTCGTCGCTCCAATCTCATCCCACTCCTCACGCGCTCTAAGTCCATCATCAATGTTCCGCCGCCACGGTTCAGGACCTTGTGTTCCGTCGCCACCGCACCGGAAACTTCGGACACCGATCACCAGACGAAGCACTCCGTCCTCCTCGAGAAGCTCAGAGCGAGACATCTCAAGGACAGTGCAAAGAGCTCAGAACTCAAGAGTAAGGACCAAACAAAGAAGAATTCTTCTTCTTCTTCTGGTGAAAGTGAGAATTTTGATGGGGTGGTGGTGAAAAAGAATAAGCTTGTTGGGAGTTTTGAAGAATTGGGTTTGAGTGAAGAGGTTATGGGTTCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATTCAGTGTATTGGTGTTCCTGCTGTCTTGCAAGAGAACAGTGTTGTGTTGGGTTCTCACACTGGCTCTGGCAAAACCCTTGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGACGAACAGTTGAATGGAATACAGTTAAAGCCCAGGAGACCTCGTGCTGTTGTGCTATGCCCTACGAGGGAGTTGTGTGAGCAGGTTTTTCGAGTTGCGAAATCAATTAGCCATCATGCACGGTTCAGGTGCACAATGGTAAGTGGTGGTGGCCGTATTAGGCCTCAAGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCAACCTGGTGTATGGCGACATCAAATACTTGGTATTGGATGAGGCAGATACAATGTTTGATCGTGGCTTTGGTCCTGATATACGCAAATTTCTGGCCCCATTGAAACATCGTGCGTCAAAGTCTGATGGCCTAGGTTTTCAGACCGTCTTGGTAACTGCAACAATGACAAAGGCTGTGCAAAAGCTAATTGATGAGGAGTTTCAGGGCATTGTACATCTGCGAACATCAACATTGCATAAAAAGATTTCTTCTGCTCGTCACGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTGGAAGCATTACTTCAGGTACTTGTGCCAAGCCGAGCAAAAGGCAACAAGGTGATGGTTTTTTGCAATACTTTGGACTCTAGCCGTGCGGTGGATCACTACCTTGTTGAAAATATGATTCCTACTGTCAACTACCATGGGGAAACTGTAGTTTTCCACAGGGTTGAAAACCTCAATAAGTTTAAGAATGACATTGATGATCGTCCAACATTAGTTTGCACAGACTTGGCCGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTTATGTTTGACTTCCCCTTGAACTCTATCGATTACCTTCATCGGACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACCAGTTTGGTTACAAAGAAGGACTTGATCTTGGCCACTAGAATAGAGGAGGCAATGAGGAAGAATGAGAGTTTGGAAGCTATCACCAAAGAAGGAGTACGAAGGGATATCGCCAGGACCCAAGTTAATGGGCAGAGTGGGAAGGACAGAAAACTAGTTAAAGTTTCTAAAGTTAAGAACAATCCTGGTGGACGTGCCAGTTCAGGGAATAAAGGATCGGATTTGAAATCCCGAAAAGGATCATCTTCAGAAAGATCTATGAAGAAAGGGATTAAGGTTTCAAATTCTGTAAAATCCTCCAGTGCAAATGGCTCAAGAAAAGCTTCTTCAGGGTATAAGCAAACAAGTAAAAGGACCAGTGCCACCAAATCGACAAATTCTAAACTCAGTGTTGTCGGGTTTAGGGGTCGGAACTCATCATCAAACCCCTTGTGA	1875	0.4539	MAGATARTLFFTVFLSSSSFTRLSRRSNLIPLLTRSKSIINVPPPRFRTLCSVATAPETSDTDHQTKHSVLLEKLRARHLKDSAKSSELKSKDQTKKNSSSSSGESENFDGVVVKKNKLVGSFEELGLSEEVMGSVREMGIEVPTEIQCIGVPAVLQENSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIQLKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRILQHIEEGNLVYGDIKYLVLDEADTMFDRGFGPDIRKFLAPLKHRASKSDGLGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLVPSRAKGNKVMVFCNTLDSSRAVDHYLVENMIPTVNYHGETVVFHRVENLNKFKNDIDDRPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDLILATRIEEAMRKNESLEAITKEGVRRDIARTQVNGQSGKDRKLVKVSKVKNNPGGRASSGNKGSDLKSRKGSSSERSMKKGIKVSNSVKSSSANGSRKASSGYKQTSKRTSATKSTNSKLSVVGFRGRNSSSNPL	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst5g04538	624	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	152	339	IPR014001	-
	Arst5g04538	624	CDD	SF2_C_DEAD	352	484	-	-
	Arst5g04538	624	MobiDBLite	consensus disorder prediction	518	624	-	-
	Arst5g04538	624	MobiDBLite	consensus disorder prediction	82	108	-	-
	Arst5g04538	624	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	119	334	IPR027417	-
	Arst5g04538	624	Gene3D	-	350	517	IPR027417	-
	Arst5g04538	624	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	364	517	IPR001650	-
	Arst5g04538	624	MobiDBLite	consensus disorder prediction	541	556	-	-
	Arst5g04538	624	Pfam	DEAD/DEAH box helicase	145	328	IPR011545	GO:0003676\|GO:0005524
	Arst5g04538	624	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	121	149	IPR014014	GO:0003724
	Arst5g04538	624	SMART	helicmild6	393	475	IPR001650	-
	Arst5g04538	624	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	272	500	IPR027417	-
	Arst5g04538	624	CDD	DEADc	132	331	-	-
	Arst5g04538	624	Pfam	Helicase conserved C-terminal domain	364	475	IPR001650	-
	Arst5g04538	624	MobiDBLite	consensus disorder prediction	567	624	-	-
	Arst5g04538	624	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	61	510	-	-
	Arst5g04538	624	SMART	ultradead3	140	359	IPR014001	-
	Arst5g04538	624	Gene3D	-	78	340	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst5g04538	Arst-Chr5	106594446	106598125	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst5g04538	120	497	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.756	6.02e-39	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst5g04538	-		-	gmx:100805709	844.728