Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04489 ATGTCCTTCCGGAGTATTGTTCGTGACGTGAGGGATGGGTTTGGAAGCTTATCAAGACGGAGTTTTGATGTAAGGCTTTCCGGCCATCACAGGGGCAAGTCACATAGTTTGGTCCATGAGTTGCAGGATCAACTGCCGGTAATACAGAACAGCCAGTGGGCTAGTCTTCCGCCTGAGCTTCTCCGTGAGGTTGTTAAAAGATTGGAAGCAGATGAGAGTACATGGCCTGCTCGTAAGCATGTTGTTTCGTGTGCTGGTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGACGTCATTAACTGTCCTGAGTTCAGTGGGAAGATTACTTTCCCCGTGTCCCTGAAGCAGCCTGGTTCTAGGGATGGACTCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCATCTATTCCTTTGTCTTAGTCCTGCATTGCTTGTTGAAAATGGGAAATTTCTTCTTTCGGCCAAACGTACCCGAAGGACAACTTGCACGGAGTATATTATATCAACAGATGCAGATAACATATCAAGATCTAGTAGCACTTATATTGGAAAATTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATATATGATACACAACCCCCATGTAGCACTGCCCAACTTTCACCACCGGGCAGAAGCCGTAGGTTTAATTCAAAAAAAGTTTCTCCAAAGGTTCCTAGTGGCAGCTATAATATTGCTCGGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGTCCACGTAGGATGAACTGCACCATGCACACAATTCCTATGTCATCCCTTGAGCCGGGTGGCTGTGTCCCGGGCCAAGCAGAGCTAGTTCCCCGTACCCTCGAGGATTCCTTCCGGAGCATCTCCTTCTCATCAAAATCGATTGACCGGTCATCGGAGTTCAGCAGCGCTAGATTCTCAGACATAATTGGGCTAGGTAATGAAGGGGAGGAGGGTAAAGAAATACCTCTAGTTCTCAAGAACAAAGCACCGAGATGGCACGAACAGCTTCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACGGTCGCCTCCGTCAAGAATTTTCAGCTTATTGCAGCAACACAACCTCCGGCCGGCGCTCCTACGCCGTCGCAGCCGACACAGTCCTCTGACCATGACAAGATTATTCTTCAGTTTGGGAAAGTTGGTAAGGACATGTTCACTATGGACTATAGATACCCACTTTCTGCATTTCAAGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1281 0.4684 MSFRSIVRDVRDGFGSLSRRSFDVRLSGHHRGKSHSLVHELQDQLPVIQNSQWASLPPELLREVVKRLEADESTWPARKHVVSCAGVCKSWREMCKDVINCPEFSGKITFPVSLKQPGSRDGLIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISTDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCSTAQLSPPGRSRRFNSKKVSPKVPSGSYNIARITYELNVLGTRGPRRMNCTMHTIPMSSLEPGGCVPGQAELVPRTLEDSFRSISFSSKSIDRSSEFSSARFSDIIGLGNEGEEGKEIPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAGAPTPSQPTQSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04489 426 Gene3D - 48 99 - -
Arst5g04489 426 Pfam Tub family 114 421 IPR000007 -
Arst5g04489 426 FunFam Tubby-like F-box protein 110 426 - -
Arst5g04489 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Arst5g04489 426 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Arst5g04489 426 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Arst5g04489 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Arst5g04489 426 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Arst5g04489 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Arst5g04489 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Arst5g04489 426 Pfam F-box domain 53 98 IPR001810 GO:0005515
Arst5g04489 426 CDD F-box_AtTLP-like 53 97 - -
Arst5g04489 426 Gene3D Tubby Protein; Chain A 112 420 IPR025659 -
Arst5g04489 426 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Arst5g04489 426 ProSitePatterns Tub family signature 2. 411 426 IPR018066 -
Arst5g04489 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
Arst5g04489 426 PANTHER TUBBY-RELATED 41 424 - -
Arst5g04489 426 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04489 Arst-Chr5 106212681 106216654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04489 1 426 TUB Transcription Factor Family AT1G76900 68.132 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Arst5g04489 Tub 2.7e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04489 K19600 - rcu:8283226 727.628