Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04484 ATGCTGGGGGACTCAGCTGTTTTGGGAACAGGAGGAGGCAGCTCTGGAGGAGCAGATGCAGTAGTCGCAACAGCCGCGACTTCTTCTGCCGCGGCTGCTGTAGCTACTGCATCAGCACCACTACCACCACCACAGTCAGTATCAGCAGCACCGCATCATCATCATGACGGTACTGCTGAAATGGTTGGTGGTGGTGGAGGGGGAGGTGGAGGATCAACCTCCGGGGACGACGAGAAAGGAGAGAGGAGCTTCGGCGGGAACAGGTGGCCGAGACAAGAGACTTTGGCTTTGCTCAAAATACGGTCGGATATGGACGTGGCGTTTCGCGATGCCAGTGTTAAGGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTAGCAGAGCTTGGATACAAGAGAAACGCGAAGAAATGCAAAGAGAAATTTGAGAATGTGTACAAGTACCACAAGAGAACGAAAGATGGTAGAAGTGGAAAATCTGAAGGAAAAACATATAGGTTCTTTGATCAATTAGAGGCACTTGAAAACAACCCAATTATTCATTCCCCAGCAATACCTCAAAAATCAGCATTGCAAGCAACACCAGTTTCAATGGTAAAAACAACCGCATCATTGCCATCCCCTCCAATAATTACAACAATGCCACAACAACAACAGGTAGTAGTAGCAAGTAGTGGCACCAACACAACATCAGCACCACCTATTAGTATTGCTACTGTTCCATCAATAGCTCCTACTACTATTTCAATGCCTCAAATTCAACCCAATAATAGTAATAATAATAATAATAATAATAATAGTAGTAATAATAATAATCCTGTATATTTTCCTCCACCACCACCACCGCCACCTGCTTCATCTTTTCCGAGTATTCCGGCGGAGCTACTCTCGAATTCGAGTTCTTCTTCGACTTCGTCGGAGGAGACGATCGAAGGAGGGAGTAGGCGGAACAAGAGGAAGAGAAGGTGGAAGGAGTTCTTTGAGAAGCTAATGAAGGAGGTGATAGAGAAGCAGGAGGATCTGCAGAAGAGGTTCCTTGAAGCAATAGAGAAGAGGGAGAAAGAGAGATCCGCTAGAGAAGAAGCATGGAGAGTTCAGGAATTACAAAGAATCAATAAAGAGAGAGAGATTCTCGCTCAAGAGAGGTCCATCGCCGCCGCCAAAGACCAAGCCGTCATGACCTTCTTGCACAAAATTGCCGACCAACAAAACCTTCCTACACCGCCATTCAACAATGTTTCTCAACCATCACCACCTCCACCACCGCCTCCACCACCACCACCGCCACCACAACAAACACAACCTACCCCGCCGGTGGTGGTGCCGCCATTACCCACACCGCCACGGCCGCCACCAAGCATGGAGATGGTGAAAGTTGTTGATAACAACAACAACAACAATGGAGAGAATAACAATAACAACAATAATAATAATTCGTCACCGCTGGCGGCGAGTTCTTCTCGGTGGCCGAAAGCTGAAGTTGAGGCGCTGATAAACCTGAGAACAAGCCTTGATGCGAAGTACCAAGAGAATGGACCAAAAGGACCATTGTGGGAAGAGATTTCAGCGTTGATGAAGAAGCATGGTTATAACAGGAACGCTAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAAGAGAGTAACAAGAAGAGGCCTCAAGATTCAAAGACTTGTCCCTATTTTCACCAGCTTGATGCTCTTTACAGGGAGAGGAATAGCGGCAAGCATGACGCTGCTCCCGCCATTGTCACTACAACGCCGTTAATGGTGAGGCCGGAGCAGCAGTGGCCTCCTCAGACGGACCAGCCCTCCTCGCAGCCGCGGGAAGTAACCATGGAAGACGCTCGGAAGGGAGGCAATGATGAGGACGAGGACGAGGAGAAGGATAATATTGGTGATGAAGATGACGACGAAGACGATGATGACGACGACGAAGGTGGTAGTAACTTTGAGATTGTGGCAAGCAAGCCAGTTTCTGCTGAGTGA 2004 0.481 MLGDSAVLGTGGGSSGGADAVVATAATSSAAAAVATASAPLPPPQSVSAAPHHHHDGTAEMVGGGGGGGGGSTSGDDEKGERSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYKRNAKKCKEKFENVYKYHKRTKDGRSGKSEGKTYRFFDQLEALENNPIIHSPAIPQKSALQATPVSMVKTTASLPSPPIITTMPQQQQVVVASSGTNTTSAPPISIATVPSIAPTTISMPQIQPNNSNNNNNNNNSSNNNNPVYFPPPPPPPPASSFPSIPAELLSNSSSSSTSSEETIEGGSRRNKRKRRWKEFFEKLMKEVIEKQEDLQKRFLEAIEKREKERSAREEAWRVQELQRINKEREILAQERSIAAAKDQAVMTFLHKIADQQNLPTPPFNNVSQPSPPPPPPPPPPPPPQQTQPTPPVVVPPLPTPPRPPPSMEMVKVVDNNNNNNGENNNNNNNNNSSPLAASSSRWPKAEVEALINLRTSLDAKYQENGPKGPLWEEISALMKKHGYNRNAKRCKEKWENINKYFKKVKESNKKRPQDSKTCPYFHQLDALYRERNSGKHDAAPAIVTTTPLMVRPEQQWPPQTDQPSSQPREVTMEDARKGGNDEDEDEEKDNIGDEDDDEDDDDDDEGGSNFEIVASKPVSAE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04484 667 SMART sant 484 546 IPR001005 -
Arst5g04484 667 SMART sant 85 147 IPR001005 -
Arst5g04484 667 MobiDBLite consensus disorder prediction 247 318 - -
Arst5g04484 667 PANTHER FI21293P1 44 627 - -
Arst5g04484 667 MobiDBLite consensus disorder prediction 247 271 - -
Arst5g04484 667 MobiDBLite consensus disorder prediction 410 453 - -
Arst5g04484 667 CDD GT1 486 551 - -
Arst5g04484 667 ProSiteProfiles Myb-like domain profile. 486 544 IPR001005 -
Arst5g04484 667 MobiDBLite consensus disorder prediction 290 309 - -
Arst5g04484 667 Gene3D - 488 549 - -
Arst5g04484 667 Gene3D - 89 150 - -
Arst5g04484 667 Pfam Myb/SANT-like DNA-binding domain 486 573 IPR044822 -
Arst5g04484 667 Pfam Myb/SANT-like DNA-binding domain 87 173 IPR044822 -
Arst5g04484 667 MobiDBLite consensus disorder prediction 272 288 - -
Arst5g04484 667 MobiDBLite consensus disorder prediction 594 615 - -
Arst5g04484 667 FunFam Trihelix transcription factor GT-2 488 549 - -
Arst5g04484 667 FunFam Trihelix transcription factor GT-2 89 150 - -
Arst5g04484 667 SUPERFAMILY Formin homology 2 domain (FH2 domain) 419 551 - -
Arst5g04484 667 Coils Coil 323 350 - -
Arst5g04484 667 ProSiteProfiles Myb-like domain profile. 87 145 IPR001005 -
Arst5g04484 667 MobiDBLite consensus disorder prediction 630 654 - -
Arst5g04484 667 MobiDBLite consensus disorder prediction 402 487 - -
Arst5g04484 667 CDD GT1 87 152 - -
Arst5g04484 667 MobiDBLite consensus disorder prediction 592 667 - -
Arst5g04484 667 MobiDBLite consensus disorder prediction 457 485 - -
Arst5g04484 667 MobiDBLite consensus disorder prediction 29 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04484 Arst-Chr5 106146882 106150389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04484 77 612 Trihelix Transcription Factor Family AT1G76880 51.134 2.08e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Arst5g04484 Myb_DNA-bind_4 4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04484 - - gmx:100804788 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04484 5 106146882 106150389 Arst5g04484 5 106146882 106150389 ECH
Arst5g04484 5 106146882 106150389 Arst9g04099 9 116160657 116163868 PCT