Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04462 ATGCGCCTCCACCGCAGCGACAAATACTCCTCCCCCGCCGGAACCATGAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCCGCTGAGATAAGGGACCCTCAATCTAAGGAGCGGCGTTGGCTGGGGACATATGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTCCGCTGCCAGAGTCTTGCGTGGCCCCAAGGCGAGAACTAACTTTTTGTACACTACTTCCCCTCCTCAACCTTCTTCCATCTTCCTCACCAACAAAAACAATCATAAAGACATCCTTAACCGCAGTAGCCACCTCTTCTTCAACAGCCGTAACTGCCACATGGGTGGTTCTTCATTTTCTACCTTCCAGCAGCTTAACTCCACAAACATGCTCATAGCCCCTTCTGCTTCCTTCTACTCTTACACCAACCCCAAGGACAGTTTAGTCAACTCATCACATGCTGGCAATGCTAATAACCCTTCTCTTTCATCTTCCTTATCATACCCCAAGGGCAGTTTAGTCAACTCATCACATGGTGGCAATGCTAACCCTTCTCTTTCATGTTCCATTAGCCACCATTTATCCTACCCCAAGGGCAGTTTAGTCAACTCATCAAATGGTAGCAATGCTCCTAACCACAGCGCAGCCTTTTCTTCCTCTTGCCTGACGAACACAAACAGTGATAATAATTATAAAGCTGATGGCAGTGAATACTCGCAAGACTCAGACTCATCATCGGGGTTGTTGGAAGAGATAGTTAGAGGTTTCTTGAAAACTCCAAAGCCCACTAAAAGTGAGTCTTTGTTGTTATTAGCTGCTCCTACACCTACTTCTCCATCCCAAGTTAAGGCTCACTCATTTCCTCCTCTTTCCGCTCTTTCCACAGGCGACACCATGAAGAAAGACCAGGATACGGCGGCTCCCTCTAGCATGCCTTTTACTCAGGAGAACAACAACAATAATAATCATCATCATCTTGAAGAGTGGCCAACCATGGAAGACATTTTTCATCAGTACCCGGACTTTCTTAATTAG 1029 0.482 MRLHRSDKYSSPAGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTYDTAEEAACAYDSAARVLRGPKARTNFLYTTSPPQPSSIFLTNKNNHKDILNRSSHLFFNSRNCHMGGSSFSTFQQLNSTNMLIAPSASFYSYTNPKDSLVNSSHAGNANNPSLSSSLSYPKGSLVNSSHGGNANPSLSCSISHHLSYPKGSLVNSSNGSNAPNHSAAFSSSCLTNTNSDNNYKADGSEYSQDSDSSSGLLEEIVRGFLKTPKPTKSESLLLLAAPTPTSPSQVKAHSFPPLSALSTGDTMKKDQDTAAPSSMPFTQENNNNNNHHHLEEWPTMEDIFHQYPDFLN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04462 342 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Arst5g04462 342 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Arst5g04462 342 CDD AP2 17 73 IPR001471 GO:0003700|GO:0006355
Arst5g04462 342 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Arst5g04462 342 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 213 - -
Arst5g04462 342 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Arst5g04462 342 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Arst5g04462 342 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Arst5g04462 342 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Arst5g04462 342 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Arst5g04462 342 MobiDBLite consensus disorder prediction 274 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04462 Arst-Chr5 105967075 105968103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04462 15 86 AP2-EREBP Transcription Factor Family AT1G12980 77.778 1.75e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst5g04462 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04462 - - aip:107641557 513.842