Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04460 ATGGCAAAGGTAAGAGATAAGCTATACGTCACTGTTCCGAGTTTATTCCGATGCCCAATTTCGATGGATGTGATGAGGTCTCCCGTAAGCCTATGCACCGGCGTCACATACGATCGGTCCAGCATCCAGCGCTGGCTCGAATCTGGTCATGACACGTGTCCTGCCACCATGCAGGTCCTCCCTTCCAAGGACTTCATCCCAAACCTTACACTCCACCGCCTCATCCGCCTATGGCTCCTCTCCGCTGCCGGAGAACCTTCATCGCCATTGGAGACACGGATCTCCGCCGCAAGCGACCGCCTCCGCGCTCTCCTCGCCGGAATTCAAACCGACGCCGAGGATTTTGCCGCTTCGCTCTCTGAGCTCGCCGAATTTTCAAGATTCTCCGCCGAAAACCGCCGTGTCCTGGTGAGCTTCCCAGGATTCGATTCCGCCATCACTCGCGCCCTCGCCGGAAGCAGGTCGCGGATTGAAGCTTTGGAAAACGTGATCGCGGTTCTGGATTTGGTTCTCAGGGAGAACGGGAGCTCCGATTCCGGTGGCGTAGAGAGGATCCGACGGTCTATACTCGATTGTCGCGAAGATTGCTTAGCAGCGATCGCTTTTGCTCTTGAGAATGGATCTGCGAAATCGAAGGTCGCATCGGTTAGAGTTTTGGAATTTCTCGCAGGCGATTTTCAATCCAAGCGGTGGATCGCAGAAACGCGAGGCTTATTGTCACAGCTCGTAAAGCTTCTGTACGACGGAACTGAGGAGCTAAACGGCGCCGTTTTGTCGCTTTTGGCTTCGGTTTCGGTGACTCAGTCTGCGAAAGCCGAGCTTGTTCGTTCCGAAATCGTCAAGGCCTTGTCGAAGACGCTGCAGAGCGGCGCCTCCAGCAGTTCCATGGCGGAGAAGTGCCTGAAAATGCTGGCGGTGGTGGCGACGTGCGCTGATGGTAGGGCAGCGATGGGCGGAGATCTTTCATGCGCTGCGGCAGTTGTGGAGAGACTGGCAAAGGCGGGAAAGGCGGCGACGGAGGACGCGGTGGCGGTGCTGTGGAGCCTGTGCTGCCTTTGCGGTAACGAAAAGGTGAGGGATGAGGTGGCGAAGCGAAACGGCGTCGCAGTGGTGCTTTTGGTTATGCAGAGAGGATGTGAGGGTCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTCTGAGGAAAATCGAGTTGCCATTAGCACTAAGATTGAGTTATGACACTAAAACTACTCATATTAAACCATGCTAA 1254 0.5518 MAKVRDKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQRWLESGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAAGEPSSPLETRISAASDRLRALLAGIQTDAEDFAASLSELAEFSRFSAENRRVLVSFPGFDSAITRALAGSRSRIEALENVIAVLDLVLRENGSSDSGGVERIRRSILDCREDCLAAIAFALENGSAKSKVASVRVLEFLAGDFQSKRWIAETRGLLSQLVKLLYDGTEELNGAVLSLLASVSVTQSAKAELVRSEIVKALSKTLQSGASSSSMAEKCLKMLAVVATCADGRAAMGGDLSCAAAVVERLAKAGKAATEDAVAVLWSLCCLCGNEKVRDEVAKRNGVAVVLLVMQRGCEGHVRSMCVDLIKVLRKIELPLALRLSYDTKTTHIKPC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04460 417 FunFam RING-type E3 ubiquitin transferase 12 84 - -
Arst5g04460 417 SUPERFAMILY ARM repeat 193 394 IPR016024 -
Arst5g04460 417 PANTHER WDSAM1 PROTEIN 11 396 IPR045185 GO:0061630
Arst5g04460 417 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Arst5g04460 417 Gene3D - 92 409 IPR011989 -
Arst5g04460 417 SUPERFAMILY RING/U-box 8 80 - -
Arst5g04460 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Arst5g04460 417 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Arst5g04460 417 CDD RING-Ubox_PUB 13 65 IPR045210 -
Arst5g04460 417 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04460 Arst-Chr5 105930102 105931587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04460 6 416 U-box Gene Family AT5G09800 39.623 6.34e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04460 - - adu:107491069 786.949