Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04433 ATGGAAGAAGAGGAGGATTATGTTGAGTATGTGCCTGTGGCCAAGCGTCGTGCCATGGAAGCTCAGAAGATTCTCCAGCGCAAGGGTCAGGCATCTACTGCCATCGATGCTGATCTCGAGAAACTAAGAGTAGCTGAAACTAAGCCCAGTCTTCTAGTTAAGGCTTCACAGTTGAAACGAGAGCAGCCTGAGATTAGTGCAACAGAACAGATTGTTCAACAAGAGAAGGAAATGATTGAGAACTTGTCAGATAGAAAGACCCTTATGTCTGTTCGTGAATTGGCTAAGGGGATTACTTATACAGAACCATTGCTTACCGGGTGGAAGCCACCTTTGCAGGTGAGAAGGATGTCTAAAAAAGAATGTGATTTGATTCGCAAACAGTGGCATATAATAGTTGATGGTGAAGATATCCCACCTCCAATTAAGAATTTTAAGGATATGCGGTTTCCTGAGCCGGTTTTGAAGAAATTAAAAGCTAAGGGAATTGTGCAACCGACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGAGGGATATGATTGGGATTGCTTTCACAGGCTCAGGAAAAACCCTGGTATTTGTGCTGCCAATGATCATGGTAGCAATGCAGGAGGAAATCATGATGCCTATTGCTCCTGGAGAAGGTCCATTCGGTTTGATAATTTGTCCTTCACGAGAACTGGCTCGGCAGACTTATGAAGTGGTTGAACAGTTCTTGATACCTTTGAAGGAAGCTGGATATCCGGAGCTCAGGCCTTTGCTATGCATCGGTGGAGTGGATATGAGATCACAGCTTGAGATTGTGAAGAAGGGTGTCCATATTGTTGTTGCCACTCCTGGTAGATTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTAGATTTAGGATTTGAAGACGACATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTGTTATTTTCTGCCACAATGCCTACAAAAATTCAGAACTTCGCCAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGACGGGCTGGGGCAGCAAATCTTGATGTGATCCAAGAGGTAGAGTATGTAAAGCAAGAGGCGAAAATCGTTTATCTCCTTGAGTGCCTTCAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAATAAGGCTGATGTCGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGAATGCCATTTCGGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCAGATATTCAGCATGTCATCAACTACGACATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGTCGAACAGGAAGATGTGGCAAGACCGGTATAGCTACAACATTCATTAACAAGAACCAGAGTGAGACAACATTGCTTGATTTGAAGCACCTCTTGCAAGAAGCAAAACAAAGAATACCTCCAGTTTTGGCTGAGCTGAATGATCCAATGGAAGACAATGATGCAATCACAGACATAAGTGGGGTGAAGGGATGTGCTTACTGTGGTGGTCTTGGTCATCGTATCCGTGATTGTCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAATAGAAAGGATTATTTTGGTTCTGGAGGTTACAGGGGTGAAATTTGA 1767 0.429 MEEEEDYVEYVPVAKRRAMEAQKILQRKGQASTAIDADLEKLRVAETKPSLLVKASQLKREQPEISATEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLQVRRMSKKECDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIAPGEGPFGLIICPSRELARQTYEVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEERENAISAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNDAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 588
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04433 588 Coils Coil 65 85 - -
Arst5g04433 588 ProSiteProfiles Zinc finger CCHC-type profile. 547 562 IPR001878 GO:0003676|GO:0008270
Arst5g04433 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 358 IPR014001 -
Arst5g04433 588 FunFam Probable ATP-dependent RNA helicase DDX41 368 530 - -
Arst5g04433 588 Pfam Zinc knuckle 546 562 IPR001878 GO:0003676|GO:0008270
Arst5g04433 588 Gene3D - 368 530 IPR027417 -
Arst5g04433 588 SMART helicmild6 408 489 IPR001650 -
Arst5g04433 588 CDD SF2_C_DEAD 370 498 - -
Arst5g04433 588 SMART ultradead3 162 373 IPR014001 -
Arst5g04433 588 Pfam Helicase conserved C-terminal domain 382 489 IPR001650 -
Arst5g04433 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Arst5g04433 588 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 103 529 - -
Arst5g04433 588 SMART c2hcfinal6 546 562 IPR001878 GO:0003676|GO:0008270
Arst5g04433 588 Gene3D - 110 362 IPR027417 -
Arst5g04433 588 FunFam Probable ATP-dependent RNA helicase DDX41 110 359 - -
Arst5g04433 588 Coils Coil 500 520 - -
Arst5g04433 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 504 IPR027417 -
Arst5g04433 588 Pfam DEAD/DEAH box helicase 167 346 IPR011545 GO:0003676|GO:0005524
Arst5g04433 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 529 IPR001650 -
Arst5g04433 588 SUPERFAMILY Retrovirus zinc finger-like domains 546 567 IPR036875 GO:0003676|GO:0008270
Arst5g04433 588 CDD DEADc_DDX41 154 359 IPR044113 GO:0000398|GO:0003724|GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Arst5g04433 Arst-Chr5 105627037 105629768 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04433 131 528 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 3.03e-56 193
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04433 K13116 - gmx:100814127 1126.31