Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04420 ATGAGTAATGAGGAGGATTGGGATCTCTTTGCCATAGTTAGAAGCTGCAAAGCTGCAAACAACACTGCACAAACTCCACAAGACACAACAAAAACTAGTAGTAATAGCATCATGTCTACTTCTTCTACAACTTGCTTGGCCACTACTACTATCACTGCAGAACAAAATGATGGTCCATTTTCTTCTAACAATTTTGTGCAGCCCAGGACCAATGGTTTCCAAGAGTTAGAACAATTGCTCAATACCTTTAACCCCACCATCACCACCACCACCACTACCACTAGTGCCCATGGCATCAATTCTAATAATCCTCCCACTTTTCCTGATTTCACAGCACCGCCATCCACCCTTGGAGCCTCCACTTCTGGTTTTGATGATAGATTCCACCACCACCAACAACATCAACAAAAGCAGCATAATCTACTACAGGTTCAAGTTCCCCAAACTAGTACAACTACTTCTCTGACTTTATTACCAAGCTCAGAATCACAATCACAATCACAAACGCAAACACCCAGATCAAGAAAAAGAAAAAGCCAACAGAAAAAAATGGTATGCCATGTAACCGCAGATAACCTCTCATCAGATTTGTGGGCATGGCGTAAATATGGCCAAAAACCCATCAAGGGTTCCCCATATCCAAGAAACTATTACAGATGCAGCAGCTGCAAAGGTTGTGTAGCAAGAAAGCAAGTAGAGCGAAGCTTATCAGACCCCACCATGTTTGTTGTAACTTACACCGGAGAACACAAGCACGCTAAACCGGCTCACCGGAACTCACTCGCCGGAAGCACCCGGAAACCATCCACGCCTCGTTTAGCTGAGACCCAAGAAAATAATGATACTAAGAATCCTAATAATAATAACAAAAATAATAGTCCTGATGAGAAGGCTCAGAATAGCATTAAGTATTTGATTGGGGGTGTGTGA 930 0.428 MSNEEDWDLFAIVRSCKAANNTAQTPQDTTKTSSNSIMSTSSTTCLATTTITAEQNDGPFSSNNFVQPRTNGFQELEQLLNTFNPTITTTTTTTSAHGINSNNPPTFPDFTAPPSTLGASTSGFDDRFHHHQQHQQKQHNLLQVQVPQTSTTTSLTLLPSSESQSQSQTQTPRSRKRKSQQKKMVCHVTADNLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCVARKQVERSLSDPTMFVVTYTGEHKHAKPAHRNSLAGSTRKPSTPRLAETQENNDTKNPNNNNKNNSPDEKAQNSIKYLIGGV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04420 309 MobiDBLite consensus disorder prediction 262 299 - -
Arst5g04420 309 FunFam WRKY transcription factor 22 177 248 - -
Arst5g04420 309 SMART WRKY_cls 194 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Arst5g04420 309 Pfam WRKY DNA -binding domain 196 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Arst5g04420 309 MobiDBLite consensus disorder prediction 110 186 - -
Arst5g04420 309 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 293 IPR044810 GO:0003700
Arst5g04420 309 Gene3D WRKY domain 177 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Arst5g04420 309 MobiDBLite consensus disorder prediction 249 301 - -
Arst5g04420 309 SUPERFAMILY WRKY DNA-binding domain 189 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Arst5g04420 309 ProSiteProfiles WRKY domain profile. 189 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Arst5g04420 309 MobiDBLite consensus disorder prediction 137 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04420 Arst-Chr5 105523639 105526956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04420 173 271 WRKY Transcription Factor Family AT5G52830 79.798 6.43e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Arst5g04420 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04420 - - ahf:112751868 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst2g00303 2 2738694 2740504 Arst5g04420 5 105523639 105526956 ECH
Arst4g03320 4 111255256 111257627 Arst5g04420 5 105523639 105526956 ECH
Arst9g00409 9 3328122 3335028 Arst5g04420 5 105523639 105526956 ECH
Arst5g04420 5 105523639 105526956 Arst5g04420 5 105523639 105526956 ECH