Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04353 ATGGATCCAACTGGTTGCATTGATGATAAGTGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTCTGCTCAGAATGTTTTCTCCCTTTGGAAAGATTGTTTCTGAGGACTTCTTGTGGCACACTCGTGGCCCGAAACGTGGGGAGCCACGGGGTTTCGCCTTTATCCAGTATAGCACAAATGAGGAAGCGAAATTGGCCAAGGAGAAAATGCATGGGAGGTTAGCTTGTGGCCGGCCGTTGGTTGTTCGCCTTGCGGGTGAGAAGTACATGTTGGAAACAGCTGATAACCCTACGAAAGCAACTGGTGAAGGACACAAGTTGCATCTTACCAGAAGCGGCATGGGACAGACAAGTCGTAGTGCAAAAATAGCCGCAATAAAGAACAAATTGAAATCCTTAGAGGAGGGTTCTAGGACCAAGAAGCAAAAGCAAAATGATGATATCTCTTGA 471 0.4544 MDPTGCIDDKCESRLYIGNLDLRITEAALLRMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTNEEAKLAKEKMHGRLACGRPLVVRLAGEKYMLETADNPTKATGEGHKLHLTRSGMGQTSRSAKIAAIKNKLKSLEEGSRTKKQKQNDDIS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04353 156 CDD RRM_RBM18 14 92 IPR039157 -
Arst5g04353 156 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 150 - -
Arst5g04353 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Arst5g04353 156 SMART rrm1_1 14 90 IPR000504 GO:0003723
Arst5g04353 156 SUPERFAMILY RNA-binding domain, RBD 11 97 IPR035979 GO:0003676
Arst5g04353 156 Gene3D - 10 102 IPR012677 -
Arst5g04353 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04353 Arst-Chr5 105298859 105301148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04353 13 95 Eukaryotic Initiation Factors Gene Family AT3G16380 38.554 3.71e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04353 K24527 - gmx:100804800 256.144