Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04309 ATGTTATTTTTTGGTTTTGTTTGGGCACCTGTGAGGAATGGCAACCGCTATGCACTCACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTACATCAGTACAGAACAGTTTCCCTGATGTATATGTTTCCTGTTGATGGGGAGAATGATGAAATCTTGGGACTTCCCGGTCGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCCAATGTTCAGTATTATACAAGTAGAGAGTACTCTCGGAGAAACCATGCTCAACATTACAATGTCCGCGGAACGTTGGCTTTGCCTGTGTTTGAATCACCAGGGCAGTCATGTGTTGGTGTATTGGAGCTGATAATGACTTCAGAGAAGGTTAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTGAATTTGAGGAGTTCAGAAATTCTGGAACATCCATTTGCTCAGATTTGCAACGAAGGTCGCCAGAATGCGTTAGCAGAGATTTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTTGCACAAACATGGGTTCCCTGTAGGCATCGGAGTGTTTTGGCAAATGGCGGCGGTCTTAAGAAAAGCTGTTCTAGTTTTGATGGCCACTGCATGGGGCGAGTTTGCATGTCTGCCTCCGATGTAGCATTCTATGTCATTGATGCTCATACATGGGGTTTCCATGATGCTTGCGCCGAGCATCACTTACAACAAGGTCAAGGTGTTGCTGGCAGGGCATTTTTATCCCATAACATGAGCTTCTGTGGAAACATAACTCAATTCTGCAAAACTGATTATCCTCTAGTTCATTATGCTCTCATGTTTGGGTTAACCAGCTGTTTCGCAATCTGTTTACAAAGTTCTCATACCGGAAGTGATGATTATGTGTTGGAGTTTTTTCTGCCACCTAGCATCACAAACTTTTATGAACAAAAGGATTTGTTGGGATCTATATTGGCAACAATGAAGCAGAATTTCCAGAGTCTTAAGGTTGCTGCCGGTGTGGAACTCGAGGAGGGTTGTACAATTGAAGTTGTAGAACCAATAAATGAAAGAATTCATTTGAGCCTTGAATCTGTTCCAGTTGCTCAATCTGCTAAATCACCACCACCTACGCTCAACGCCTCGCTAAATAAGGATGATGGAGTGCCACAAGGTCCGCTAGAACAGCAAATGCCGGCATGGTTGGAAGATATAAATGATGGAGGGAATCTTGGTGATAATGCAGGTGGAAGCATGAATCCGATGACTTCCTTAGATGCTAAAATCAAGAAGAAACCCTCTGAAAGAAAACGTGGAAAAGCCGAGAAAATGATTAGTCTTGAAGTTTTGCAACGTTACTTTAGTGGAAGTCTGAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCGACGACTATGAAGCGTATCTGTAGGCAGCATGGAATATCTCGTTGGCCGTCAAGAAAGATCAATAAGGTTAACCGTTCCTTATCGAAGCTCAAGTGTGTCATTGAATCAGTCCGAGGTGCAGAAGGAGCATTTGCTTTGAATTCTGTAAATAAAGATCCACTTCCCATTGCTGCCGGTTCCTTTACCGAGCCTTGTACTTCAAAAATGTTCAACCGGAATGCCTCGTTGAGCATCCAGCCATCCAAGACTCGGATGAATGAAAATGATTTGGATACTTCGAGAGTATCAGAGACAAACCGACAGGTGAGGATGCAAGATCAATTGCTTGAAGGGGAACAGAGTCCTGAGAAGGTGATCCATGAAGAAGGTTGGTCTACTCAAGAAGTTGGCACTAAAGATCCAGAGAAGTTTAGAAATCTTAGTGGTTCAAGTGAAGATAGCGCAAATCCCCATTCTCACAATTCATGTCATGGTAGTCCCCCAAATGAAATTTCACCTGCAAATATATTCAGACCATTCAACAAAGAGAAATCTGTTCCGTTAGGAGTTTCGACAGAGTCAACAATGCAGCCAACTAATGCACTGAATTATGCAAATGCATATACTGCGCTTAACGTCGAGAGAACAGAACCTCAAGAACCATTTGGCAGAATGCTACTTGAGGGTGTTGGTAGTTCTAAAGACTTGAGAAATTTGTGCCCTTTGGAGGATCAAGCTTTAGAAGCTTGTGGGGTTAATCCACCATGTCATGACTTGGCTCCCAAGCAATGCATGATGGATACTACCCTTAATAGCAACAATACTATGATACCTTTTGCACCTAAGAAAGAGATGAAGAGTGTGACAATTAAGGCAACATATAAAGAAGATATCATAAGGTTTAGGGTGTTTTTGAACTGTGGCATTGTTGAACTGCAGGAAGAAATTTCAAAGAGATTGAAACTAGAAATTGGAGCATTTGATATAAAGTATCTGGACGATGATAATGAATGGGTTTTGATATCATGTGATGCAGATCTTCAGGAGTGCATGGATGTTTTAACTTCATCAGGAAGCAACATGATAAGGCTTGTGGTGCATGACACAGTTTCCATTCTTGGAAGCTCTTGTGAGAGCTCTGGGAACTGA 2538 0.4228 MLFFGFVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDEILGLPGRVFQQKLPEWTPNVQYYTSREYSRRNHAQHYNVRGTLALPVFESPGQSCVGVLELIMTSEKVNYAPEVDKVCKALEAVNLRSSEILEHPFAQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGHCMGRVCMSASDVAFYVIDAHTWGFHDACAEHHLQQGQGVAGRAFLSHNMSFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGSDDYVLEFFLPPSITNFYEQKDLLGSILATMKQNFQSLKVAAGVELEEGCTIEVVEPINERIHLSLESVPVAQSAKSPPPTLNASLNKDDGVPQGPLEQQMPAWLEDINDGGNLGDNAGGSMNPMTSLDAKIKKKPSERKRGKAEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVRGAEGAFALNSVNKDPLPIAAGSFTEPCTSKMFNRNASLSIQPSKTRMNENDLDTSRVSETNRQVRMQDQLLEGEQSPEKVIHEEGWSTQEVGTKDPEKFRNLSGSSEDSANPHSHNSCHGSPPNEISPANIFRPFNKEKSVPLGVSTESTMQPTNALNYANAYTALNVERTEPQEPFGRMLLEGVGSSKDLRNLCPLEDQALEACGVNPPCHDLAPKQCMMDTTLNSNNTMIPFAPKKEMKSVTIKATYKEDIIRFRVFLNCGIVELQEEISKRLKLEIGAFDIKYLDDDNEWVLISCDADLQECMDVLTSSGSNMIRLVVHDTVSILGSSCESSGN 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04309 845 SMART PB1_new 750 832 IPR000270 GO:0005515
Arst5g04309 845 SUPERFAMILY CAD & PB1 domains 749 835 - -
Arst5g04309 845 Pfam PB1 domain 751 831 IPR000270 GO:0005515
Arst5g04309 845 PANTHER PROTEIN NLP8 7 845 IPR045012 GO:0003700
Arst5g04309 845 MobiDBLite consensus disorder prediction 583 610 - -
Arst5g04309 845 ProSiteProfiles RWP-RK domain profile. 432 513 IPR003035 -
Arst5g04309 845 Gene3D - 747 831 - -
Arst5g04309 845 ProSiteProfiles PB1 domain profile. 750 832 IPR000270 GO:0005515
Arst5g04309 845 Pfam RWP-RK domain 446 493 IPR003035 -
Arst5g04309 845 MobiDBLite consensus disorder prediction 549 638 - -
Arst5g04309 845 CDD PB1_NLP 751 831 IPR034891 -
Arst5g04309 845 MobiDBLite consensus disorder prediction 611 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04309 Arst-Chr5 105012864 105016949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04309 712 843 NLP Transcription Factor Family AT1G64530 44.444 5.96e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Arst5g04309 PB1 6e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04309 - - gmx:100780901 1221.45