Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04307 ATGCCAGACTCCTGTGAAGAAAAATCTGAACTTCCTTCCAAGTCAAAGCCACAAGAAGAACATGGTTTTCCCATGGATTTTGATATATACCTTGAAAGTTCATCATGGCCCATGGATCACACCCCTTCTGCTTCCAACCCCATGTCTCCTTTCATCATAACAACCTCCTCTGAACAACCTTTTTCTCCTCTCTGGGCTTTCTCTGATGTTGAAGATGATCACAGGCATGTCAGGGTTGTTGCAGGTGATAATACAAATACAAATACAGCAATTGAAACTGAAAATCCGGTTGAAAATGATGACAACAAAAAAATAGTGTCACCCCCCTTTGTGCCTCTTCCACCTATAAAAATTCCAGATGGTTATTGTCTAATTAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAACAGTTGACTGAACAGAATTTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGCAACCGCTATGCACTCACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTACATCAGTACAGAACAGTTTCCCTGATGTATATGTTTCCTGTTGATGGGGAGAATGATGAAATCTTGGGACTTCCCGGTCGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCCAATGTTCAGTATTATACAAGTAGAGAGTACTCTCGGAGAAACCATGCTCAACATTACAATGTCCGCGGAACGTTGGCTTTGCCTGTGTTTGAATCACCAGGGCAGTCATGTGTTGGTGTATTGGAGCTGATAATGACTTCAGAGAAGGTTAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTGAATTTGAGGAGTTCAGAAATTCTGGAACATCCATTTGCTCAGATTTGCAACGAAGGTCGCCAGAATGCGTTAGCAGAGATTTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTTGCACAAACATGGGTTCCCTGTAGGCATCGGAGTGTTTTGGCAAATGGCGGCGGTCTTAAGAAAAGCTGTTCTAGTTTTGATGGCCACTGCATGGGGCGAGTTTGCATGTCTGCCTCCGATGTAGCATTCTATGTCATTGATGCTCATACATGGGGTTTCCATGATGCTTGCGCCGAGCATCACTTACAACAAGGTCAAGGTGTTGCTGGCAGGGCATTTTTATCCCATAACATGAGCTTCTGTGGAAACATAACTCAATTCTGCAAAACTGATTATCCTCTAGTTCATTATGCTCTCATGTTTGGGTTAACCAGCTGTTTCGCAATCTGTTTACAAAGTTCTCATACCGGAAGTGATGATTATGTGTTGGAGTTTTTTCTGCCACCTAGCATCACAAACTTTTATGAACAAAAGGATTTGTTGGGATCTATATTGGCAACAATGAAGCAGAATTTCCAGAGTCTTAAGGTTGCTGCCGGTGTGGAACTCGAGGAGGGTTGTACAATTGAAGTTGTAGAACCAATAAATGAAAGAATTCATTTGAGCCTTGAATCTGTTCCAGTTGCTCAATCTGCTAAATCACCACCACCTACGCTCAACGCCTCGCTAAATAAGGATGATGGAGTGCCACAAGGTCCGCTAGAACAGCAAATGCCGGCATGGTTGGAAGATATAAATGATGGAGGGAATCTTGGTGATAATGCAGGTGGAAGCATGAATCCGATGACTTCCTTAGATGCTAAAATCAAGAAGAAACCCTCTGAAAGAAAACGTGGAAAAGCCGAGAAAATGATTAGTCTTGAAGTTTTGCAACGTTACTTTAGTGGAAGTCTGAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCGACGACTATGAAGCGTATCTGTAGGCAGCATGGAATATCTCGTTGGCCGTCAAGAAAGATCAATAAGGTTAACCGTTCCTTATCGAAGCTCAAGTGTGTCATTGAATCAGTCCGAGGTGCAGAAGGAGCATTTGCTTTGAATTCTGTAAATAAAGATCCACTTCCCATTGCTGCCGGTTCCTTTACCGAGCCTTGTACTTCAAAAATGTTCAACCGGAATGCCTCGTTGAGCATCCAGCCATCCAAGACTCGGATGAATGAAAATGATTTGGATACTTCGAGAGTATCAGAGACAAACCGACAGGTGAGGATGCAAGATCAATTGCTTGAAGGGGAACAGAGTCCTGAGAAGGTGATCCATGAAGAAGGTTGGTCTACTCAAGAAGTTGGCACTAAAGATCCAGAGAAGTTTAGAAATCTTAGTGGTTCAAGTGAAGATAGCGCAAATCCCCATTCTCACAATTCATGTCATGGTAGTCCCCCAAATGAAATTTCACCTGCAAATATATTCAGACCATTCAACAAAGAGAAATCTGTTCCGTTAGGAGTTTCGACAGAGTCAACAATGCAGCCAACTAATGCACTGAATTATGCAAATGCATATACTGCGCTTAACGTCGAGAGAACAGAACCTCAAGAACCATTTGGCAGAATGCTACTTGAGGGTGTTGGTAGTTCTAAAGACTTGAGAAATTTGTGCCCTTTGGAGGATCAAGCTTTAGAAGCTTGTGGGGTTAATCCACCATGTCATGACTTGGCTCCCAAGCAATGCATGATGGATACTACCCTTAATAGCAACAATACTATGATACCTTTTGCACCTAAGAAAGAGATGAAGAGTGTGACAATTAAGGCAACATATAAAGAAGATATCATAAGGTTTAGGGTGTTTTTGAACTGTGGCATTGTTGAACTGCAGGAAGAAATTTCAAAGAGATTGAAACTAGAAATTGGAGCATTTGATATAAAGTATCTGGACGATGATAATGAATGGGTTTTGATATCATGTGATGCAGATCTTCAGGAGTGCATGGATGTTTTAACTTCATCAGGAAGCAACATGATAAGGCTTGTGGTGCATGACACAGTTTCCATTCTTGGAAGCTCTTGTGAGAGCTCTGGGAACTGA 2961 0.4222 MPDSCEEKSELPSKSKPQEEHGFPMDFDIYLESSSWPMDHTPSASNPMSPFIITTSSEQPFSPLWAFSDVEDDHRHVRVVAGDNTNTNTAIETENPVENDDNKKIVSPPFVPLPPIKIPDGYCLIKERMTQALRHFKQLTEQNFLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDEILGLPGRVFQQKLPEWTPNVQYYTSREYSRRNHAQHYNVRGTLALPVFESPGQSCVGVLELIMTSEKVNYAPEVDKVCKALEAVNLRSSEILEHPFAQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGHCMGRVCMSASDVAFYVIDAHTWGFHDACAEHHLQQGQGVAGRAFLSHNMSFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGSDDYVLEFFLPPSITNFYEQKDLLGSILATMKQNFQSLKVAAGVELEEGCTIEVVEPINERIHLSLESVPVAQSAKSPPPTLNASLNKDDGVPQGPLEQQMPAWLEDINDGGNLGDNAGGSMNPMTSLDAKIKKKPSERKRGKAEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVRGAEGAFALNSVNKDPLPIAAGSFTEPCTSKMFNRNASLSIQPSKTRMNENDLDTSRVSETNRQVRMQDQLLEGEQSPEKVIHEEGWSTQEVGTKDPEKFRNLSGSSEDSANPHSHNSCHGSPPNEISPANIFRPFNKEKSVPLGVSTESTMQPTNALNYANAYTALNVERTEPQEPFGRMLLEGVGSSKDLRNLCPLEDQALEACGVNPPCHDLAPKQCMMDTTLNSNNTMIPFAPKKEMKSVTIKATYKEDIIRFRVFLNCGIVELQEEISKRLKLEIGAFDIKYLDDDNEWVLISCDADLQECMDVLTSSGSNMIRLVVHDTVSILGSSCESSGN 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04307 986 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Arst5g04307 986 SMART PB1_new 891 973 IPR000270 GO:0005515
Arst5g04307 986 Pfam RWP-RK domain 587 634 IPR003035 -
Arst5g04307 986 CDD PB1_NLP 892 972 IPR034891 -
Arst5g04307 986 PANTHER PROTEIN NLP8 57 986 IPR045012 GO:0003700
Arst5g04307 986 PANTHER PROTEIN NLP8 57 986 IPR045012 GO:0003700
Arst5g04307 986 SUPERFAMILY CAD & PB1 domains 890 976 - -
Arst5g04307 986 MobiDBLite consensus disorder prediction 1 26 - -
Arst5g04307 986 MobiDBLite consensus disorder prediction 724 751 - -
Arst5g04307 986 ProSiteProfiles PB1 domain profile. 891 973 IPR000270 GO:0005515
Arst5g04307 986 MobiDBLite consensus disorder prediction 690 779 - -
Arst5g04307 986 Gene3D - 888 972 - -
Arst5g04307 986 MobiDBLite consensus disorder prediction 752 773 - -
Arst5g04307 986 Pfam PB1 domain 892 972 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04307 Arst-Chr5 105012463 105016949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04307 853 984 NLP Transcription Factor Family AT1G64530 43.791 1.08e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Arst5g04307 PB1 7.4e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04307 - - gmx:100780901 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04307 5 105012463 105016949 Arst9g03113 9 108676756 108680156 PCT