Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04267 ATGGGGTGCCAGAAAATAGAAAAAACAAAAGCAAAACACAGAAAAGGGTTATGGTCACCTGAAGAAGATAACAAGCTCAGAAATTATATCCTAAACTATGGTCATGGTTGTTGGAGTTCAGTCCCCATTAAAGCAGGGTTGCAAAGGAATGGAAAGAGTTGCAGATTAAGGTGGATTAATTACTTGAGGCCAGGGTTAAAAAGAGGCATGTTCACCAAACAAGAGGAGGATACAATTCTCACCTTTCACCACATGTTGGGAAACAAGTGGTCTCAGATAGCACAAAAATTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGCATTCATATTTGAAGAAGAAAGTTGCCAAAGAAAAAGAGATTGATGAATCTCATCAACAAGTTCAGTATGCTACCTCAAGCTCAGAAACAATAGACTATTCATTCTCTCCCAATAAACTTGTAACTAATGATCCAAACTATGGATTGTTACTACAAAACATGGATAAACCAGCACCAAATTTAGTTGATCACTCATATGAACATAATCATAATAATATTACTAATAATAATTACCAATTATCCAAGGAGGCTTCACATGGCTCCTTACCAAAATTGTTGTTTGCTGAGTGGCTTTCATTAGACCAAGTAAATGGTGGTAGTTCTATGAACTCAGATGAGTCTTTGATGATATTGGGAAATGGGTTTGATCAAAATTCAACTTTTCAAGAAGATTTGATGCATATGTCATCATCAGAAGGACCCTTTGGTGGAGAATATCAGAATAGTCTAAGTCAATGTTCAGCAACTGAAGTGTACAATTCAGAGGTTAATAAGTTCTCAAATCAGGTTGTTGGAAATGACTACATTCAACATTTCATTGATGATGATGCTGATTTGTGCAGCAATTTCAGCCTCAACAATGGTGCAATGTATGTTATGAGTAATTCACTATGA 942 0.3588 MGCQKIEKTKAKHRKGLWSPEEDNKLRNYILNYGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMFTKQEEDTILTFHHMLGNKWSQIAQKLPGRTDNEIKNYWHSYLKKKVAKEKEIDESHQQVQYATSSSETIDYSFSPNKLVTNDPNYGLLLQNMDKPAPNLVDHSYEHNHNNITNNNYQLSKEASHGSLPKLLFAEWLSLDQVNGGSSMNSDESLMILGNGFDQNSTFQEDLMHMSSSEGPFGGEYQNSLSQCSATEVYNSEVNKFSNQVVGNDYIQHFIDDDADLCSNFSLNNGAMYVMSNSL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04267 313 SMART sant 14 64 IPR001005 -
Arst5g04267 313 SMART sant 67 115 IPR001005 -
Arst5g04267 313 CDD SANT 71 113 IPR001005 -
Arst5g04267 313 CDD SANT 18 62 IPR001005 -
Arst5g04267 313 Gene3D - 15 67 - -
Arst5g04267 313 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Arst5g04267 313 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Arst5g04267 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Arst5g04267 313 FunFam MYB transcription factor 12 68 - -
Arst5g04267 313 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Arst5g04267 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Arst5g04267 313 Gene3D - 70 139 - -
Arst5g04267 313 PANTHER MYB DOMAIN PROTEIN 55 1 238 - -
Arst5g04267 313 FunFam MYB transcription factor 70 142 - -
Arst5g04267 313 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Arst5g04267 313 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04267 Arst-Chr5 104591657 104594939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04267 8 128 MYB Transcription Factor Family AT3G48920 71.311 3.06e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst5g04267 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04267 K09422 - gmx:100803537 380.563