Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04253 ATGGCTCAACCTCACCCCAATCATCTCACATGGATTCACCTTCACCTCATCCTCCTCTTCCTCCTCCATGGTAGTCATAGTGTAGTTCATGCACAAGGTTCCATGGAGCCAGTTCCCACAGACATCTCCCACCACAGTTGGCAACCTTCTTTTGCAATCACCATAGGTGCCATCATCTGTGCCTTCCTCTTCATGGGGATCATCACAGTCTACCTTCGTAACTGTACTGGTTCACACATCAACAACAGAAACCAAACCAACCAAACCTCCTCAGAATGTTCATGTTCTTGTTCACAAGGGATCACTAAGGAACTCCTCAACACTTTCCCAATCCTCTTCTACCCCACCATCAAGGACCTCAAGATAGGTAAAGCATCATTGGAATGTGCAATTTGCTTAACTGATTTCAAGGACTATGACACACTGAGGCTTCTACCAAAGTGCGACCATGTCTTTCACCCTCAATGCATAGACTCATGGCTATGTTCCCATGTCACGTGCCCGGTTTGTCGCGCGAATCTGAACCAAGATACATGCGAAATTGCCATAACTGTTCCGACCCAATTTAGCACTCCCCAAAGTGGTGAAGAAAGTCTAGGACTTGAAGCTGAAAACAACGGTGGTGAAGAGCACAACGCGGTGGAACAAAACCATGTCGAGAAAAACGAGGTTTTGAACAGCAACGATGGTGGTGGTGGTGGTGGTGAAGGTGATGGTGGTAGTGATGGGGTTGTGTCAAAACCGAAGCTTTTGAAGTCAAATTCAACGGGACACACGGTTGTGGAGCAAGTGAAGAGCGAGGAGAGGTACACACTGAGGTTACCGGAAGATGTGAGGAGGTACATTCTGGTGAACCATGGTGAAACGGTGCAGCGTTCCTCCAGCTACAACAACAACAATGGCAACAACGTGGTGAGAGGGGTGTGTTGGAGTGAGATTGAAGAGAGCAGCGGTGGTGGTAAGAGAAGCAACAATGGTGAGGTGAAGGTGGAGAGGTGGGTGCTTTGTAGCCGTGGTTGA 1020 0.4833 MAQPHPNHLTWIHLHLILLFLLHGSHSVVHAQGSMEPVPTDISHHSWQPSFAITIGAIICAFLFMGIITVYLRNCTGSHINNRNQTNQTSSECSCSCSQGITKELLNTFPILFYPTIKDLKIGKASLECAICLTDFKDYDTLRLLPKCDHVFHPQCIDSWLCSHVTCPVCRANLNQDTCEIAITVPTQFSTPQSGEESLGLEAENNGGEEHNAVEQNHVEKNEVLNSNDGGGGGGEGDGGSDGVVSKPKLLKSNSTGHTVVEQVKSEERYTLRLPEDVRRYILVNHGETVQRSSSYNNNNGNNVVRGVCWSEIEESSGGGKRSNNGEVKVERWVLCSRG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04253 339 CDD RING-H2_EL5-like 128 171 - -
Arst5g04253 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 180 IPR013083 -
Arst5g04253 339 FunFam E3 ubiquitin-protein ligase ATL6 88 177 - -
Arst5g04253 339 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Arst5g04253 339 SUPERFAMILY RING/U-box 128 177 - -
Arst5g04253 339 Pfam Ring finger domain 128 171 IPR001841 -
Arst5g04253 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 296 - -
Arst5g04253 339 MobiDBLite consensus disorder prediction 223 258 - -
Arst5g04253 339 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04253 Arst-Chr5 104525122 104526878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04253 7 283 Rapid Response to Elicitors AT3G05200 33.922 1.33e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04253 K10664 - gmx:100782532 302.753