Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04252 ATGAATTTCCTCAGGTACTGCCACGTCATCACCACCATCTTCCTTCTATCAGTACCCAACATTACTGCTCAATTGGCGGCTCCGTCAGCTCACCGACCAGTAGTCACCCAAAACAACGACGGAAACCCTTCGATTGCGATTGTTCTCGTCGTTCTCATCTTCGCATTCTTCATGACTGGCTTCTGCGCCGTCTACATTCGCCACTGCAATGAAAGCTACGTCGTTCAGGGAGCTGCCGCTGCCAACGCCGCCACTGCTCCACGTGGCGTCGATCCGGAGGTGCTCTCCACGTTCCCAATTATGGTTTATTCCACCGTGAAGCACCTCAAAACGGGTCACAGTGCGTCGCTTCAGTGCGCTGTGTGCTTGAGCGAGTTCAAGGACATGGACAAGCTCAGACTTTTGCCCAAGTGCAGTCACGTGTTTCACCCCGAGTGCATCGACGCGTGGCTCGCCTCGCACGTGACTTGTCCTGTCTGCAGGGCCAAGATGAAGTCGGAAAACATGGAGTTCAAGGTTGAGATTCAGGAGTTAGAGGGAACTGCCAACCATGTGTTCGATGAAATGTCTGGGAGAATGGGTGAGGTTTCTTGTGATGGGAACGAAGGTGGGGTTGGTGAGGGAGTTGATGGGGTTGTTGGGAAGTGTAATGGGACCTCAAAAGTGAGAGCTTTTGGGTTGTTGGTGAGGTCGCACTCTACGGGTCACTCTCTTGTGGAACCGGGGAAGAGCTTGGAGAGGTTCACTTTGAGGTTGCCTGAGGAATTGAGGAAGCAGATTCTGGAAGCCAATCATAAGTGTAGTGGTGGTAGTGGTGGGATGAAGCGTTCTGCAAGCTACGACGTGGTTTTGCAGAGTGAAGTTGGTGAAGGTAGTAGTAGTAATAAGGGGAGTAAGAATAGCAGGTGGGTGCTGTCTATGACACCTCCGTTTGTTTCTCGCGGTTGGGGTCATTTTAGTACTTCTTCTGGTTTGGCACCGCCGAATGAGTGCTCAACATGCTCTGGGATTCCTAGGCTTTGGGGTTCTTCAGCGGCAAGAGAAGAGAAAGTATGTGAAGGGAGAGAGGGTTTGCAACTGGTGTGA 1086 0.5184 MNFLRYCHVITTIFLLSVPNITAQLAAPSAHRPVVTQNNDGNPSIAIVLVVLIFAFFMTGFCAVYIRHCNESYVVQGAAAANAATAPRGVDPEVLSTFPIMVYSTVKHLKTGHSASLQCAVCLSEFKDMDKLRLLPKCSHVFHPECIDAWLASHVTCPVCRAKMKSENMEFKVEIQELEGTANHVFDEMSGRMGEVSCDGNEGGVGEGVDGVVGKCNGTSKVRAFGLLVRSHSTGHSLVEPGKSLERFTLRLPEELRKQILEANHKCSGGSGGMKRSASYDVVLQSEVGEGSSSNKGSKNSRWVLSMTPPFVSRGWGHFSTSSGLAPPNECSTCSGIPRLWGSSAAREEKVCEGREGLQLV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04252 361 Pfam Ring finger domain 118 161 IPR001841 -
Arst5g04252 361 CDD RING-H2_EL5-like 118 161 - -
Arst5g04252 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
Arst5g04252 361 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Arst5g04252 361 SMART ring_2 119 160 IPR001841 -
Arst5g04252 361 FunFam E3 ubiquitin-protein ligase ATL6 78 167 - -
Arst5g04252 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 255 - -
Arst5g04252 361 SUPERFAMILY RING/U-box 112 165 - -
Arst5g04252 361 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04252 Arst-Chr5 104505174 104507271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04252 2 314 Rapid Response to Elicitors AT3G05200 36.070 4.83e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04252 K10664 - gmx:102665105 223.402