Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04248 ATGACTCCGCCTCCACCCACGCCGGTGGACACCTCCGACTCCCCCGCTACCGGCGGTGAGTCTCAGAGATCCATTCCGACTCCCTTTCTAACTAAGACCTACCAGCTCGTTGAGGACCAGTCCATTGATGACGTCATCTCCTGGAACGACGACGGATCCACCTTCATCGTCTGGAATCCTACCGTCTTCGCCAGAGACCTTCTCCCTAAGTATTTCAAGCACAATAATTTCTCTAGCTTTGTTCGCCAGCTCAACACCTATGGATTTAGAAAAGTTGTACCTGATCGGTGGGAATTCTCCAACGACTGTTTCCGCCGGGGAGAGAAGCGCCTCCTCTGCGAGATTCAGCGCCGGAAGATCTCCACGCCCTCACCGTCGCCGTCTCCCACGGCTGCCGGGATTGCCACCGCCACCGTCGCGGTTCCTTCTCCGATGCCGTTGACCGCTATACCCACGGCGATGCCGATAATATCACCGTCTAACTCCGGCGACGAGCAGGTGATATCGTCGAGCTCTTCGCCGTCGCGAGCCCCGGCGGAGCTCCTCGACGAAAACGAGAGGCTACGGAAGGAGAACGTGCAGCTCACGAAGGAGCTCGCCGAGATGAGATCGCTTTGCAACAACATCTTCTCCCTGATGTCGAATTACGCCACCACCAACGCCGCCACAACTACCACCACAAACAACAGCAATAGCAACCAAATCGATGGAAGCGCCCAAGGAAGCAGAGATTCCGCTTTCACGGCAGTGAGGCCGCTAGATTTGATGCCGGTGAAGAGGAGTTCGAGCGGGGAACCGTGGACGGAAACGGCGACGGCGATGATGGTGGAGGAGATGAATCCGAAGCTCTTTGGCGTGGCAATTGGAGCAAAGCGTGCGAGAGAAGGAGGTGGTGGTGGTGGTGAAGGAGGAGGAGGAGGAGGAGGTGGTAGTGCTGGTGGAAGAGCAGGGGAGGAGGATACGCTGTTGCGCCTTCATCAGCCTGGTTATGCGGACGTGAAATCGGAGCCGTTAGATTGCCAGAACCATCGCGATAATAGTAGTAATCAGGAGACCCCATGGCTGAATCAGTGCCACAGAGCGAATCAAAGAGTTTGCAATTGA 1104 0.5634 MTPPPPTPVDTSDSPATGGESQRSIPTPFLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKISTPSPSPSPTAAGIATATVAVPSPMPLTAIPTAMPIISPSNSGDEQVISSSSSPSRAPAELLDENERLRKENVQLTKELAEMRSLCNNIFSLMSNYATTNAATTTTTNNSNSNQIDGSAQGSRDSAFTAVRPLDLMPVKRSSSGEPWTETATAMMVEEMNPKLFGVAIGAKRAREGGGGGGEGGGGGGGGSAGGRAGEEDTLLRLHQPGYADVKSEPLDCQNHRDNSSNQETPWLNQCHRANQRVCN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04248 367 MobiDBLite consensus disorder prediction 294 352 - -
Arst5g04248 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 235 IPR027725 -
Arst5g04248 367 MobiDBLite consensus disorder prediction 224 244 - -
Arst5g04248 367 SUPERFAMILY "Winged helix" DNA-binding domain 26 118 IPR036390 -
Arst5g04248 367 MobiDBLite consensus disorder prediction 1 26 - -
Arst5g04248 367 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g04248 367 Gene3D - 21 119 IPR036388 -
Arst5g04248 367 MobiDBLite consensus disorder prediction 155 178 - -
Arst5g04248 367 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g04248 367 MobiDBLite consensus disorder prediction 12 26 - -
Arst5g04248 367 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g04248 367 MobiDBLite consensus disorder prediction 155 181 - -
Arst5g04248 367 FunFam Heat stress transcription factor B-4 21 119 - -
Arst5g04248 367 Coils Coil 185 205 - -
Arst5g04248 367 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g04248 367 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g04248 367 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04248 Arst-Chr5 104484038 104485900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04248 1 367 HSF AT5G62020 44.503 7.97e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst5g04248 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04248 K09419 - gmx:100812267 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04248 5 104484038 104485900 Arst5g04248 5 104484038 104485900 ECH