Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04244 ATGAAGTTCAAACTGAAAAAGTGCCGTAGCAAGAGGGAAATGATGGAGGGCCACAGTGAACTGGGTCTTATTGGAGATCATTTTGACGGCGGTTTGCTGGGCAGGATTAAGGACGATGGGTATGAAAGCCGGTCCGGTAGCGACAATTTCGAAGGTGCATCTGGTGATGATCAAGAAGCTGCTAATGATCAGCCAAAGAGGAAAAAGAAATACCACAGGCACACTCCTCACCAAACTCAGGAGCTTGAAGCTTTCTTCAAGGATTGTAATCATCCTGATGAGAAGCAAAGGGCAGATCTTAGTAGAAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAAAATCGACGAACCCAAATGAAGACGCAAATCGAGCGCCATGAGAACATGATTCTTAAGCAGGAAAATGAGAGGCTCCGAGCTGAGAACAGTGTGATGAGGGAAGCTATGGCAAACCCAATGTGCAACAACTGTGGTGGAGCAGCCATTCCAGGGCAAATTTCATTTGATGAGCATCAGATTAGAATTGAAAATGCTCGGTTGAAGGATGAATTGAACCGTATATGTGCCTTGGCGAACAAGTTTCTTGGCAGGCCAATCTCATCATTGGCCAGCCCCATGTCCTTGCCTGCCTCGAATTCTGGTCTAGAGCTCGGTATTGGCAGGAATGGTTTTAGTGGTGGTTCAAGCGGTCTTGGCATGTCAATGGGGCTTGATTTTGGGGACTTTTCAGGGGGCACTCTGCCTGCGATTTCTGGGATTAGATCACCGATGGGGTTGATGGGAAATGAAATCCATGCGGAGAGATCTATGCTATTGGAACTTGCATTAGTGGCTATGGACGAATTAATCAAGATGGCTCAGGCAGATAGCCCACTTTGGATTAAGATGGATGGCGGGAAGGAAATTCTGAACCAAGAAGAGTATGCAAGAATGTCTTCTTTTATTTCTCCAACATCTCCGGGATATGTAACTGAAGCTTCGAGAGAAACCGGTGTAGTAATAATCAACAGTTCAGCCCTCGTTGAAACAATGATGGACCCGGAACGATGGTCGGAGATGTTTCCTTCTATGGTTTCTAGAGCTGTAACCCTTGATGTTATAGCTAGTGGCATGGGTGGATCAAGAAATGGATCTTTGCAAGTGATGCAAGCGGAGATTCAATTGCTTTCGCCACTCGTTCCTGTTCGTCAATTGAGCTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGGTTGTGGGCAGTGGTAGATGCTTCAATTGATGCTGGTCGCAATTTTAAGAGGCTTCCATCAGGCTTTCTTGTGCAAGATACACCCAACGGTTTCTCAAAGATTACTTGGGTTGAGCATTCCCAATATGATGAGAGTCTCATTCACCAACTGTATCGGCCGTTGATTGCTTCCGGGCTCGGCTTCGGCGCTCCTAGATGGATTGCCACTCTCCAAAGGCAGTGTGAATGTTTGGCAATACACATGTCCTCTTCAATCCCAAGCGAGGACGCCACAGCCATAAGCCCAGCTGGTAGGAGAAGCATGCTGAAGCTTGCGCAACGCATGGCTAATAACTTCTTTTCTGGGATTTGTCTGTCTTCATCGCAAAAATGGGACACACACCATCTCGGCAATGTTGGTGATGAGATCAAAGTTATGACCCGGAAAAACACTGATGTCCCCGGTGAGCCCCCTAGCATCGTCTTGTGTGCGGCCACTTCAGTCTGGATGCCGGTGTCGCGGCAGAGGGTGTTTGACTTCTTGCGTGACGAACGGATGAGAGGGGAGTGGGTCATCTTATCCGGCATTGGACAAATGAAGGAGATGCTTCGCATTTCCAAAGGACAAGTTGATGGAAATTCCTTATCGGTCCTTCGTGCTAATGCTAATAATGGCGGCGAGAGCAGCAACAACACGCTGTTTTTGCAGGAGACATGGAACGATACCTCATGCTCGGCGTTGCTGTATTCGCCGGTGGAGGTGGAATCGTTGAAAGTGGTAATGAGTGGAGGAGATTCCACATATGTTGCACTCATCCCTTCAGGCTTTACCATTCATCCGGATGGTCATTCCGGCACACAAGATGGAGATGACGGTGGCAGTTCCGGATGCCTGCTCACAGTTGGGCTACAGATATTGCTGAACAGCCTCCCCACGGCCAAGCTCACGGCGGAGTCAGTCGAAACCGTGAACGACCTCATCACAGGCACCATTCAGAAGATCAAAGCTTCACTAGGAGTTGCGTAG 2244 0.4826 MKFKLKKCRSKREMMEGHSELGLIGDHFDGGLLGRIKDDGYESRSGSDNFEGASGDDQEAANDQPKRKKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMKTQIERHENMILKQENERLRAENSVMREAMANPMCNNCGGAAIPGQISFDEHQIRIENARLKDELNRICALANKFLGRPISSLASPMSLPASNSGLELGIGRNGFSGGSSGLGMSMGLDFGDFSGGTLPAISGIRSPMGLMGNEIHAERSMLLELALVAMDELIKMAQADSPLWIKMDGGKEILNQEEYARMSSFISPTSPGYVTEASRETGVVIINSSALVETMMDPERWSEMFPSMVSRAVTLDVIASGMGGSRNGSLQVMQAEIQLLSPLVPVRQLSFLRFCKQHAEGLWAVVDASIDAGRNFKRLPSGFLVQDTPNGFSKITWVEHSQYDESLIHQLYRPLIASGLGFGAPRWIATLQRQCECLAIHMSSSIPSEDATAISPAGRRSMLKLAQRMANNFFSGICLSSSQKWDTHHLGNVGDEIKVMTRKNTDVPGEPPSIVLCAATSVWMPVSRQRVFDFLRDERMRGEWVILSGIGQMKEMLRISKGQVDGNSLSVLRANANNGGESSNNTLFLQETWNDTSCSALLYSPVEVESLKVVMSGGDSTYVALIPSGFTIHPDGHSGTQDGDDGGSSGCLLTVGLQILLNSLPTAKLTAESVETVNDLITGTIQKIKASLGVA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04244 747 ProSiteProfiles START domain profile. 267 492 IPR002913 GO:0008289
Arst5g04244 747 Pfam START domain 277 489 IPR002913 GO:0008289
Arst5g04244 747 SUPERFAMILY Homeodomain-like 55 125 IPR009057 -
Arst5g04244 747 FunFam Homeobox-leucine zipper protein HDG1 54 141 - -
Arst5g04244 747 SUPERFAMILY Bet v1-like 270 489 - -
Arst5g04244 747 Gene3D - 54 142 - -
Arst5g04244 747 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Arst5g04244 747 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Arst5g04244 747 CDD homeodomain 68 125 IPR001356 GO:0003677
Arst5g04244 747 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Arst5g04244 747 Coils Coil 119 154 - -
Arst5g04244 747 CDD START_ArGLABRA2_like 271 488 - -
Arst5g04244 747 SMART START_1 276 489 IPR002913 GO:0008289
Arst5g04244 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 744 IPR042160 -
Arst5g04244 747 SMART HOX_1 67 129 IPR001356 GO:0003677
Arst5g04244 747 MobiDBLite consensus disorder prediction 39 77 - -
Arst5g04244 747 SUPERFAMILY Bet v1-like 508 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04244 Arst-Chr5 104449761 104453946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04244 37 744 Homeobox Transcription Factor Family AT3G61150 56.849 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst5g04244 START 8.2e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04244 K09338 - gmx:100785102 1029.24