Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04239 ATGATGGAGGGCCACAGTGAACTGGGTCTTATTGGAGATCATTTTGACGGCGGTTTGCTGGGCAGGATTAAGGACGATGGGTATGAAAGCCGGTCCGGTAGCGACAATTTCGAAGGTGCATCTGGTGATGATCAAGAAGCTGCTAATGATCAGCCAAAGAGGAAAAAGAAATACCACAGGCACACTCCTCACCAAACTCAGGAGCTTGAAGCTTTCTTCAAGGATTGTAATCATCCTGATGAGAAGCAAAGGGCAGATCTTAGTAGAAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAAAATCGACGAACCCAAATGAAGACGCAAATCGAGCGCCATGAGAACATGATTCTTAAGCAGGAAAATGAGAGGCTCCGAGCTGAGAACAGTGTGATGAGGGAAGCTATGGCAAACCCAATGTGCAACAACTGTGGTGGAGCAGCCATTCCAGGGCAAATTTCATTTGATGAGCATCAGATTAGAATTGAAAATGCTCGGTTGAAGGATGAATTGAACCGTATATGTGCCTTGGCGAACAAGTTTCTTGGCAGGCCAATCTCATCATTGGCCAGCCCCATGTCCTTGCCTGCCTCGAATTCTGGTCTAGAGCTCGGTATTGGCAGGAATGGTTTTAGTGGTGGTTCAAGCGGTCTTGGCATGTCAATGGGGCTTGATTTTGGGGACTTTTCAGGGGGCACTCTGCCTGCGATTTCTGGGATTAGATCACCGATGGGGTTGATGGGAAATGAAATCCATGCGGAGAGATCTATGCTATTGGAACTTGCATTAGTGGCTATGGACGAATTAATCAAGATGGCTCAGGCAGATAGCCCACTTTGGATTAAGATGGATGGCGGGAAGGAAATTCTGAACCAAGAAGAGTATGCAAGAATGTCTTCTTTTATTTCTCCAACATCTCCGGGATATGTAACTGAAGCTTCGAGAGAAACCGGTGTAGTAATAATCAACAGTTCAGCCCTCGTTGAAACAATGATGGACCCGGAACGATGGTCGGAGATGTTTCCTTCTATGGTTTCTAGAGCTGTAACCCTTGATGTTATAGCTAGTGGCATGGGTGGATCAAGAAATGGATCTTTGCAAGTGATGCAAGCGGAGATTCAATTGCTTTCGCCACTCGTTCCTGTTCGTCAATTGAGCTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGGTTGTGGGCAGTGGTAGATGCTTCAATTGATGCTGGTCGCAATTTTAAGAGGCTTCCATCAGGCTTTCTTGTGCAAGATACACCCAACGGTTTCTCAAAGATTACTTGGGTTGAGCATTCCCAATATGATGAGAGTCTCATTCACCAACTGTATCGGCCGTTGATTGCTTCCGGGCTCGGCTTCGGCGCTCCTAGATGGATTGCCACTCTCCAAAGGCAGTGTGAATGTTTGGCAATACACATGTCCTCTTCAATCCCAAGCGAGGACGCCACAGCCATAAGCCCAGCTGGTAGGAGAAGCATGCTGAAGCTTGCGCAACGCATGGCTAATAACTTCTTTTCTGGGATTTGTCTGTCTTCATCGCAAAAATGGGACACACACCATCTCGGCAATGTTGGTGATGAGATCAAAGTTATGACCCGGAAAAACACTGATGTCCCCGGTGAGCCCCCTAGCATCGTCTTGTGTGCGGCCACTTCAGTCTGGATGCCGGTGTCGCGGCAGAGGGTGTTTGACTTCTTGCGTGACGAACGGATGAGAGGGGAGTGGGTCATCTTATCCGGCATTGGACAAATGAAGGAGATGCTTCGCATTTCCAAAGGACAAGTTGATGGAAATTCCTTATCGGTCCTTCGTGCTAATGCTAATAATGGCGGCGAGAGCAGCAACAACACGCTGTTTTTGCAGGAGACATGGAACGATACCTCATGCTCGGCGTTGCTGTATTCGCCGGTGGAGGTGGAATCGTTGAAAGTGGTAATGAGTGGAGGAGATTCCACATATGTTGCACTCATCCCTTCAGGCTTTACCATTCATCCGGATGGTCATTCCGGCACACAAGATGGAGATGACGGTGGCAGTTCCGGATGCCTGCTCACAGTTGGGCTACAGATATTGCTGAACAGCCTCCCCACGGCCAAGCTCACGGCGGAGTCAGTCGAAACCGTGAACGACCTCATCACAGGCACCATTCAGAAGATCAAAGCTTCACTAGGAGTTGCGTAG 2205 0.4839 MMEGHSELGLIGDHFDGGLLGRIKDDGYESRSGSDNFEGASGDDQEAANDQPKRKKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMKTQIERHENMILKQENERLRAENSVMREAMANPMCNNCGGAAIPGQISFDEHQIRIENARLKDELNRICALANKFLGRPISSLASPMSLPASNSGLELGIGRNGFSGGSSGLGMSMGLDFGDFSGGTLPAISGIRSPMGLMGNEIHAERSMLLELALVAMDELIKMAQADSPLWIKMDGGKEILNQEEYARMSSFISPTSPGYVTEASRETGVVIINSSALVETMMDPERWSEMFPSMVSRAVTLDVIASGMGGSRNGSLQVMQAEIQLLSPLVPVRQLSFLRFCKQHAEGLWAVVDASIDAGRNFKRLPSGFLVQDTPNGFSKITWVEHSQYDESLIHQLYRPLIASGLGFGAPRWIATLQRQCECLAIHMSSSIPSEDATAISPAGRRSMLKLAQRMANNFFSGICLSSSQKWDTHHLGNVGDEIKVMTRKNTDVPGEPPSIVLCAATSVWMPVSRQRVFDFLRDERMRGEWVILSGIGQMKEMLRISKGQVDGNSLSVLRANANNGGESSNNTLFLQETWNDTSCSALLYSPVEVESLKVVMSGGDSTYVALIPSGFTIHPDGHSGTQDGDDGGSSGCLLTVGLQILLNSLPTAKLTAESVETVNDLITGTIQKIKASLGVA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04239 734 Gene3D - 41 129 - -
Arst5g04239 734 MobiDBLite consensus disorder prediction 24 64 - -
Arst5g04239 734 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Arst5g04239 734 SUPERFAMILY Bet v1-like 257 476 - -
Arst5g04239 734 SMART START_1 263 476 IPR002913 GO:0008289
Arst5g04239 734 SMART HOX_1 54 116 IPR001356 GO:0003677
Arst5g04239 734 FunFam Homeobox-leucine zipper protein HDG1 41 128 - -
Arst5g04239 734 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Arst5g04239 734 SUPERFAMILY Homeodomain-like 42 112 IPR009057 -
Arst5g04239 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 731 IPR042160 -
Arst5g04239 734 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Arst5g04239 734 CDD homeodomain 55 112 IPR001356 GO:0003677
Arst5g04239 734 ProSiteProfiles START domain profile. 254 479 IPR002913 GO:0008289
Arst5g04239 734 Coils Coil 106 141 - -
Arst5g04239 734 Pfam START domain 264 476 IPR002913 GO:0008289
Arst5g04239 734 SUPERFAMILY Bet v1-like 495 718 - -
Arst5g04239 734 CDD START_ArGLABRA2_like 258 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04239 Arst-Chr5 104448750 104453946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04239 24 731 Homeobox Transcription Factor Family AT3G61150 56.849 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst5g04239 START 8e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04239 K09338 - gmx:100785102 1028.08