Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04180 ATGGAGCCACTTTTAACCGTTATTTTTGTTGTAAACATGAACACTGTATGGGAGAAAGTTATGTCAACTCTTAGAGCTCAGATCTTTGGCAGAATATTGATTCAAAAGGTTGAATTTTTCGACAAATACAAGGTTGGAGAACTCACTGGTTTGTTAACATCTGATCTGGGTTCCCTTAAAGATATTGTGAGCGAGAATGTCTCAAGGGATCGCGGTTTCAGGGCATTATCTGAGGTCATTGGGACAATATTCATTCTTTTTTCTTTATCCCCTCAGCTAGCCCCACTTCTTGGTATTCTGATGCTCACGGTTTCTGTCTCAGTCGCTGTCTACAAGAGATCAACATTTCCTGTTTTCAAAGCACATGGGTTGGCCCAAGCATCAATAGCTGATTGTGTATCAGAAACATTCTCTGCTATTCGAACAGTAAGATCTTTTGGTGGTGAAAAGCGGCAGATGTTTACATTTGCTAAACAGGTTCTGTCTTTCCAGTCAAGTGGGATAAAGCTTGGTACTTTCAAATCATTTAATGAATCTATGACCAGGGTTGCTGTTTATATCTCTTTGATTTCATTATATTGTCTTGGAGGGAACAAAGTTAAGGCGGGTGAGCTCTCTGTCGGAGCTATGGCATCTTTTATTGGATATACTTTCACTTTAACATTTGCTGTTCAAGGACTGGTTAATACCTTTGGGGATCTTCGAGGAGCTTTTGCGGCCGTTGACAGGATCAACTCTGTTTTATCTGGAGTTCAAGTTGATGATTCTCTTGCCTATGGCTTAGAAAGAGAACTAAGGCAACAGAAAGCAGTGGATGATGAGAAATATAAATTATTCTTCTCTAATAGTTCAACTGAGAAAAACCAAATGCATTACATGTCGGCACTAAAAACATCTAGCAATTTGTTTAGCTTGGCTTGGTCTGGAGATGTTTGTCTTGAAGATGTCTATTTCTCTTATCCTTTAAGGCCAGATGTGGAAATCTTACGTGGGTTAAATTTAAAACTAAATTGTGGAACTGTAACTGCACTGGTAGGTTCTAGTGGCGCAGGCAAAAGTACCATAGTGCAGCTATTGGCTAGATTCTATGAGCCAGCAAGAGGTTGCATAACGGTTGCGGGAGAGGATGTAAGAACATTTGACAAGAGCGAATGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTCTTCTCGGTGTCGGTTGGAGAAAATATTGCATATGGTCTTCCAGATGAGAATGTTTCTAAGGAGGATGTCATTAAGGCAGCAAAAGCTGCCAATGCTCATGATTTTATCATCTCACTTCCACAGGGCTATGATACACTTGTCGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGGCAGAGAATCGCCATAGCCCGAGCTATCTTAAAGAATGCTCCAATCCTTATACTGGACGAGGCCACGAGTGCGCTGGATGCTGTCAGCGAGCGGCTGGTACAAGAAGCTCTCAACCATTTGATGAAAGGGAGGACGACACTAGTTATAGCTCATCGATTAAGCACGGTTCAAAATGCTCATCAAATTGCGCTTTGTTCCGAAGGGAGGATCGCGGAACTAGGCACACATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCCCTGGTTAGCACTCAGAGGCTTGCATTTGAATGA 1668 0.4233 MEPLLTVIFVVNMNTVWEKVMSTLRAQIFGRILIQKVEFFDKYKVGELTGLLTSDLGSLKDIVSENVSRDRGFRALSEVIGTIFILFSLSPQLAPLLGILMLTVSVSVAVYKRSTFPVFKAHGLAQASIADCVSETFSAIRTVRSFGGEKRQMFTFAKQVLSFQSSGIKLGTFKSFNESMTRVAVYISLISLYCLGGNKVKAGELSVGAMASFIGYTFTLTFAVQGLVNTFGDLRGAFAAVDRINSVLSGVQVDDSLAYGLERELRQQKAVDDEKYKLFFSNSSTEKNQMHYMSALKTSSNLFSLAWSGDVCLEDVYFSYPLRPDVEILRGLNLKLNCGTVTALVGSSGAGKSTIVQLLARFYEPARGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAILKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAHQIALCSEGRIAELGTHFELLAKKGQYASLVSTQRLAFE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04180 555 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 236 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Arst5g04180 555 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 309 553 - -
Arst5g04180 555 Pfam ABC transporter 329 480 IPR003439 GO:0005524
Arst5g04180 555 SUPERFAMILY ABC transporter transmembrane region 4 249 IPR036640 GO:0005524|GO:0016020
Arst5g04180 555 SMART AAA_5 338 532 IPR003593 GO:0016887
Arst5g04180 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 550 IPR027417 -
Arst5g04180 555 CDD ABC_MTABC3_MDL1_MDL2 313 550 - -
Arst5g04180 555 Gene3D - 309 552 IPR027417 -
Arst5g04180 555 ProSitePatterns ABC transporters family signature. 452 466 IPR017871 GO:0005524|GO:0016887
Arst5g04180 555 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 3 553 IPR039421 -
Arst5g04180 555 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 311 549 IPR003439 GO:0005524
Arst5g04180 555 Gene3D ABC transporter type 1, transmembrane domain 2 252 IPR036640 GO:0005524|GO:0016020
Arst5g04180 555 Pfam ABC transporter transmembrane region 12 223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04180 Arst-Chr5 103929767 103934126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04180 308 555 Calmodulin-binding Proteins AT2G36910 54.582 1.42e-76 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04180 K05657 - gmx:100791034 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04180 5 103929767 103934126 Arst5g04180 5 103929767 103934126 ECH