Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04171 ATGGACCTTGATGGGGGCAACAAGCGCGTGTACCAACGATTAGGTGGACCCTCAGGGGACTCGAAGCATCAGAAAGTGTGCTATCACTGGCAAGCTGGCAAGTGCAATCGTCACCCATGCCCTTTTCTTCATAGCGAGTTGCCAACTCCCAATGTTAATGGTACCTCTTCGAAGAGGCCTCATGGTTCTGCTGACAATTCTGGATTTTCGGGACATCGCCGGAACCCTCACTTCAACAACACATGGGGTCGCGGTGGTGGTCGTGGTGGCGGTCGCGGTGCCGGTGGTGGAGTTGTTGGTGGTGACATGAGTGTAGTTAGGAAGGCTGATAAAGTTTGTAATTATTGGATTCAGGGGAATTGTAATTTTGGTGAGAGGTGTAAGTTCCTTCACTCTTGGAATACAGGGGATGGGTTTTCTATGTTGACACAGCTTGAAGGCCATCAGAAGGTTGTTAGTGGAATTGCCTTTCCTTCTGGCTCGGATAAGCTTTATACTGGAAGTACTGATGAGTCTGTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTGTAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTAGGCATACCTAATTTTGTGAAGGTCTGGAACACACAAAATTCAATGGAACTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGTATGGAAGTTCAATGTAGTTGCTAACTGCTTTGAGCCAGCTGCATCACTTAAGGGTCACACGCGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTCTACTCCGGTTCAATGGACAATACAATAAGAGTCTGGAATCTTGAAAATTTAGAGTGTTTACAGACATTAACAGACCACACGTCTGTCGTGATGTCTGTTCTCTGTTGGGAGCAGTTCCTTTTGTCTTGTTCGTTAGACAAAACAGTAAAGGTGTGGTATGCTACTGAAAGTGGAAACTTGGAAGTGACATATACTCACAACGAAGAGCATGGAATAGTTACTCTCTGTGGAATGCACGATGCACATGGCAAGCCCATTTTGTTGTGCTCTTGCAATGATAATACTGTGCGCTTCTATGACCTGCCATCATTTGCAGAGAGAGGCAAGATATTTACAAAGCAAGAGGTACGGGCAATTCAGGCAGGGCCTAATGGCTTATTCTTCACTGGTGATGGAACTGGTCAAGTCAAAGTGTGGAATTGGACACCGGAGCCAATACCTACCATTCAATAA 1308 0.4526 MDLDGGNKRVYQRLGGPSGDSKHQKVCYHWQAGKCNRHPCPFLHSELPTPNVNGTSSKRPHGSADNSGFSGHRRNPHFNNTWGRGGGRGGGRGAGGGVVGGDMSVVRKADKVCNYWIQGNCNFGERCKFLHSWNTGDGFSMLTQLEGHQKVVSGIAFPSGSDKLYTGSTDESVRVWDCQSGKCVAVINLGGEVGCMISEGPWVFVGIPNFVKVWNTQNSMELSLNGPVGQVYALVVNNDMLFAGTQDGSILVWKFNVVANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLENLECLQTLTDHTSVVMSVLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGIVTLCGMHDAHGKPILLCSCNDNTVRFYDLPSFAERGKIFTKQEVRAIQAGPNGLFFTGDGTGQVKVWNWTPEPIPTIQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04171 435 PANTHER - 107 430 IPR044715 -
Arst5g04171 435 Pfam WD domain, G-beta repeat 265 298 IPR001680 GO:0005515
Arst5g04171 435 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Arst5g04171 435 Pfam WD domain, G-beta repeat 142 177 IPR001680 GO:0005515
Arst5g04171 435 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Arst5g04171 435 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Arst5g04171 435 FunFam Zinc finger CCCH domain-containing protein 48 225 433 - -
Arst5g04171 435 SUPERFAMILY WD40 repeat-like 139 428 IPR036322 GO:0005515
Arst5g04171 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Arst5g04171 435 SMART c3hfinal6 109 133 IPR000571 GO:0046872
Arst5g04171 435 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Arst5g04171 435 Gene3D - 133 198 IPR015943 GO:0005515
Arst5g04171 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Arst5g04171 435 MobiDBLite consensus disorder prediction 51 95 - -
Arst5g04171 435 MobiDBLite consensus disorder prediction 51 77 - -
Arst5g04171 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Arst5g04171 435 Gene3D - 205 431 IPR015943 GO:0005515
Arst5g04171 435 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Arst5g04171 435 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Arst5g04171 435 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Arst5g04171 435 Gene3D - 7 56 - -
Arst5g04171 435 MobiDBLite consensus disorder prediction 1 23 - -
Arst5g04171 435 Pfam Zinc finger domain 113 131 - -
Arst5g04171 435 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Arst5g04171 435 Gene3D - 102 132 - -
Arst5g04171 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
Arst5g04171 435 FunFam Zinc finger CCCH domain-containing protein 48 133 223 - -
Arst5g04171 435 SMART WD40_4 261 298 IPR001680 GO:0005515
Arst5g04171 435 SMART WD40_4 342 385 IPR001680 GO:0005515
Arst5g04171 435 SMART WD40_4 301 338 IPR001680 GO:0005515
Arst5g04171 435 SMART WD40_4 138 177 IPR001680 GO:0005515
Arst5g04171 435 SMART WD40_4 217 254 IPR001680 GO:0005515
Arst5g04171 435 SMART WD40_4 388 425 IPR001680 GO:0005515
Arst5g04171 435 SUPERFAMILY CCCH zinc finger 108 132 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04171 Arst-Chr5 103867018 103871548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04171 240 428 Miscellaneous Gene Families AT5G08390 27.551 2.14e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst5g04171 WD40 0.0049 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04171 - - gmx:100775542 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04171 5 103867018 103871548 Arst5g04171 5 103867018 103871548 ECH