Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04169 ATGATGATAATTAACACAGAAATGTCACAAAGTGAAGATGAAGAGATCAACATGGCAGCTTGGATTCTTGGTGTTAAAAATCTATCAATTCAACCATATCCACTTCCTTCTTTAGGTCCCCATGATGTTAAAATTAGAATTAAAGCTGTTGGTATTTGTGGAAGTGATGTTCATTACTATAAGACTATGAGATGTGCAAATTTTATTGCCAACAAGCCTATGGTACTGGGGCATGAATGTGCTGGAATCATTCAAGAACTTGGCACTCAAGTTCAATCTCTTGCAGTAGGGGACAGGGTAGCCTTAGAGCCTGGAATCAGTTGCCAAACATGCAATTTCTGCAAAGGTGGCCGCTACAATCTCTGTCGCCGCATGAAATTTTTTGGATCAGCATCAACTCACACTCACGGTTCTCTTGCCAATATGGTGGTGCATCCTGCCAATCTGTGTTTCAAGCTACCTGATAATGTGAGCTTGGAGGAAGGAGCCATGATTGAGCCACTCAGTGTAGGAGTGCATGCCTGTCGTCGCGCGAATATTAGTCCAGACACAAATGTACTGATCATAGGAGCAGGACCAATTGGCCTTGTAGTATCACTTGCTGCTAGGGCATTTGGATCACCAAGAATTGTGATGGTTGATGTTGATAACACTCGTTTATCAATTGCAAAAGATCTTGGTGCAGATGAGACTATTCTAGTTTCAACTAGTATCCAGGACATGGAGAAAGAAGTGGTGCAAATCCAGAATGCCATGAGGTCTAAGATTCATGTGAGTTTTGACTGTGTTGGCTACAATAAAACCATGTCCACATCACTCAATGTCAGCACCTCTGGTGGCAAAGTTTGCCTCATTGGATTAGCTCAAACTGAGATGACAGTTCCCCTTACTCCGGCCGCAGCCAGGGAGGTTGATGTAATTGGAATATTCAGATACAGAAACACTTGGCCCCTATGCATTGAGCTATTAAGAACTGGGAAGATTGACATCAAGCCATTGATAAGTCACAGGTTTGGATTCTCACAGAAAGAGTTGGAAGAAGCCTTTGAAACCAGTGCTCAAGGAGGAAATGCTATTAAGATCATGTTCAATCTCTAG 1098 0.4244 MMIINTEMSQSEDEEINMAAWILGVKNLSIQPYPLPSLGPHDVKIRIKAVGICGSDVHYYKTMRCANFIANKPMVLGHECAGIIQELGTQVQSLAVGDRVALEPGISCQTCNFCKGGRYNLCRRMKFFGSASTHTHGSLANMVVHPANLCFKLPDNVSLEEGAMIEPLSVGVHACRRANISPDTNVLIIGAGPIGLVVSLAARAFGSPRIVMVDVDNTRLSIAKDLGADETILVSTSIQDMEKEVVQIQNAMRSKIHVSFDCVGYNKTMSTSLNVSTSGGKVCLIGLAQTEMTVPLTPAAAREVDVIGIFRYRNTWPLCIELLRTGKIDIKPLISHRFGFSQKELEEAFETSAQGGNAIKIMFNL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04169 365 PANTHER SORBITOL DEHYDROGENASE 17 365 - -
Arst5g04169 365 SMART PKS_ER_names_mod 24 363 IPR020843 GO:0016491
Arst5g04169 365 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Arst5g04169 365 CDD sorbitol_DH 19 364 IPR045306 GO:0016616
Arst5g04169 365 Gene3D - 170 310 - -
Arst5g04169 365 Pfam Zinc-binding dehydrogenase 193 323 IPR013149 -
Arst5g04169 365 Pfam Alcohol dehydrogenase GroES-like domain 40 153 IPR013154 -
Arst5g04169 365 Gene3D - 26 352 - -
Arst5g04169 365 FunFam Sorbitol dehydrogenase 170 310 - -
Arst5g04169 365 SUPERFAMILY GroES-like 18 191 IPR011032 -
Arst5g04169 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 329 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04169 Arst-Chr5 103861299 103863460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04169 20 298 Monolignol Biosynthesis Gene Families AT4G37980 25.517 5.05e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04169 K00008 K19635 qsa:O6P43_008279 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04169 5 103861299 103863460 Arst5g04169 5 103861299 103863460 ECH