Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04162 ATGAACAGATACTCCATTTTAAAGTGTGAAGCTTTCCAAAAGAAGAAGATGGTGAGAGGAAAGATTGAGATGAAACGGATAGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGAGGAGGAGTGGGCTTCTAAAGAAAGCACATGAGCTTTCTGTTCTTTGTGATGCACAAATTGCTCTTATAATCTTTTCACAAAGTGGGAGGCTCTTTGAATACTCAAGTACTTCAGACATGGATCAACTTTTGGAACGCTACCGTCAATATGTAGCAGATGATGGTCGTATCAATAATATTGGAGAATTCCAGCAATTGGAATTTGATCCCCCAAGCTTGGCTAAGAAGATTGAACTTCTTGAGCTTTCTCAAAGGAAGCTAATGGGACAGGGCCTGAGCTCTTGTTCATTTGATGAACTCGTTGGAATTGAGAATCAGCTTGTGTCAAGCTTGCAAAACATTAGGCTCAAAAAGGCTCAGCTTTATAGAGAGCATATTGAACAACTACAAAATAAGGAGAAGGATTTGCTCCTGGAGAATGCCAAATTAACTGAAATGTGTGTGCAAAGAAAAAAATCAGAAGAGCAATGGGGCAAACAGAGAGGCGCAACATTATCCCCTAGTCCAAGTAACCAAAGTTCTGTTCTTGTGGAGACTGAATTGTTCATTGGACTTCCTGAATGGCGCTAG 687 0.4032 MNRYSILKCEAFQKKKMVRGKIEMKRIENATSRQVTFSKRRSGLLKKAHELSVLCDAQIALIIFSQSGRLFEYSSTSDMDQLLERYRQYVADDGRINNIGEFQQLEFDPPSLAKKIELLELSQRKLMGQGLSSCSFDELVGIENQLVSSLQNIRLKKAQLYREHIEQLQNKEKDLLLENAKLTEMCVQRKKSEEQWGKQRGATLSPSPSNQSSVLVETELFIGLPEWR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04162 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 192 - -
Arst5g04162 228 FunFam MADS-box transcription factor MADS-MC 29 100 - -
Arst5g04162 228 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Arst5g04162 228 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Arst5g04162 228 CDD MADS_MEF2_like 19 93 IPR033896 GO:0000977|GO:0045944
Arst5g04162 228 Gene3D - 30 93 IPR036879 GO:0003677|GO:0046983
Arst5g04162 228 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Arst5g04162 228 Coils Coil 158 185 - -
Arst5g04162 228 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g04162 228 SUPERFAMILY SRF-like 19 94 IPR036879 GO:0003677|GO:0046983
Arst5g04162 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Arst5g04162 228 Pfam K-box region 111 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g04162 228 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Arst5g04162 228 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Arst5g04162 228 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04162 Arst-Chr5 103790158 103798692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04162 17 228 MADS-box Gene Family AT4G22950 49.774 6.94e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst5g04162 K-box 5.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04162 - - aip:107642209 392.504