Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04160 ATGGTGAGAGGAAAGATTGAGATGAAACGGATAGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGAGGAGGAGTGGGCTTCTAAAGAAAGCACATGAGCTTTCTGTTCTTTGTGATGCACAAATTGCTCTTATAATCTTTTCACAAAGTGGGAGGCTCTTTGAATACTCAAGTACTTCAGACATGGATCAACTTTTGGAACGCTACCGTCAATATGTAGCAGATGATGGTCGTATCAATAATATTGGAGAATTCCAGCAATTGGAATTTGATCCCCCAAGCTTGGCTAAGAAGATTGAACTTCTTGAGCTTTCTCAAAGGAAGCTAATGGGACAGGGCCTGAGCTCTTGTTCATTTGATGAACTCGTTGGAATTGAGAATCAGCTTGTGTCAAGCTTGCAAAACATTAGGCTCAAAAAGGCTCAGCTTTATAGAGAGCATATTGAACAACTACAAAATAAGGAGAAGGATTTGCTCCTGGAGAATGCCAAATTAACTGAAATGTGTGTGCAAAGAAAAAAATCAGAAGAGCAATGGGGCAAACAGAGAGGCGCAACATTATCCCCTAGTCCAAGTAACCAAAGTTCTGTTCTTGTGGAGACTGAATTGTTCATTGGACTTCCTGAATGGCGCTAG 639 0.4085 MVRGKIEMKRIENATSRQVTFSKRRSGLLKKAHELSVLCDAQIALIIFSQSGRLFEYSSTSDMDQLLERYRQYVADDGRINNIGEFQQLEFDPPSLAKKIELLELSQRKLMGQGLSSCSFDELVGIENQLVSSLQNIRLKKAQLYREHIEQLQNKEKDLLLENAKLTEMCVQRKKSEEQWGKQRGATLSPSPSNQSSVLVETELFIGLPEWR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04160 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst5g04160 212 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g04160 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst5g04160 212 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Arst5g04160 212 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Arst5g04160 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst5g04160 212 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Arst5g04160 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst5g04160 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst5g04160 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst5g04160 212 Coils Coil 142 169 - -
Arst5g04160 212 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Arst5g04160 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst5g04160 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Arst5g04160 212 Pfam K-box region 95 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04160 Arst-Chr5 103790158 103798878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04160 1 212 MADS-box Gene Family AT4G22950 49.774 3.12e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst5g04160 K-box 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04160 - - aip:107642209 392.504