Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04131 ATGAGTGACAAAGAGAAGTTTGAGCTTGACAGAAAGGAGGATCCCATGAATTATTCCACCGGAATGGCCTCGGATCGGAGATTCGGAAGTTCCAATCTTCCGAATTCATCTGTGGGTTTGGCTGGCAGAGGGGATCTAAATGGTTCCTCTTCATGTTCCTCTGCTTCCCTAGTGGACTCCTTTGGCCCAAACTTCTGGGACACTACGACGAATTCCCAGAACTTGGGGTTTTGTGGCATCAATGTTCACAACAGTGGGAGCTCTTTGAACCCAATTGAACTCAGAAAAGATGGGTTTGGATTTGGAAGAGGTGGTCATGATCATGGAACACTTGAAATGGGTTGGAATCAAGGTAATGGCTTTATACCAAATGAGTCTGCAATGTTCTCCCAGAACTTGTCTCGGTTTCCAAGTGATTCTGGATTTATTGAGCGTGCAACGAGATTCTCGTGCTTTGGTGGAGGGGATTTCGGAGATATGGTGAATGCTTATGGGATTCCTCAATCCATGGGCCCTTATGCTGGTACCGGTGGTGAGGCAATTCACCGAGCAAGAGATGGAGGACAACCTCAAGAGAGCAATCCAAATGAAGCTGAAGCTGAAGCTGTGAAAGATGCGACACCATCTGTGGAGTATCTTGCTACTAAAGCTAGCCCGCTCAAGAATGATAAAAGAAGTGAAAACCATGTAATGCCTCAAAATGAAGGACAACAAGGTCCTTCTAGGCCTCCGAATGAGACTGACCGAGCCAAATCTAGCGATGATGGCGGTGTTCAAGATGACTCCCCAATGTTGGATGGTGTTAGCGACGAACCTTGTCTTAAAGGACTAGATTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCTGATAATGATAAAGCTGTTGAACTACCTACGGAAGGTGCAGGGGATATCTCTGAGAGCCAACAAAAGGGAGAGCAGGAACCTACTCCAACAAACAAAGCCTCTGGAAAGAATGCCAAACAAGGGCCTCAAGTTTCGGATCCACCTAAGGAGGAATACATACATGTCAGGGCTCGGCGGGGTCAAGCAACTAATAGCCACAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTTACTGGCAAGGCCGTAATGCTTGATGAAATAATTAACTATGTACAGTCGCTTCAACGACAGGTTGAGTTCTTGTCCATGAAACTCGCAACTGTAAATCCGCGGCTGGATTTTGATATTGAAGGACTTATCCCTAAAGATATTCTTCACCAACGGCCGGGTCCTTCTTCTGCATTGGGGTTTCCTTTAGAAATGTCTATGGCTTTCCCTCCGCTACACCCATCACAACCGGGACTAATTCAGCCAACTCTTCCTAGCATAGCCAACTCTTCTGATATCCTTCGGAGAACTGTTCATCCACAGTTGGCATCACCCGCTAGTGGAAGTTTCAAGGAGCCAAATCAGGTTCCTGATGTGTGGGAAGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCTACTACAACTGCTCCCATGAGTACCCAAGATGTGGATGGTACTGTGGCAGCAACTCAGATGAAGGTCGAACTTTGA 1620 0.4642 MSDKEKFELDRKEDPMNYSTGMASDRRFGSSNLPNSSVGLAGRGDLNGSSSCSSASLVDSFGPNFWDTTTNSQNLGFCGINVHNSGSSLNPIELRKDGFGFGRGGHDHGTLEMGWNQGNGFIPNESAMFSQNLSRFPSDSGFIERATRFSCFGGGDFGDMVNAYGIPQSMGPYAGTGGEAIHRARDGGQPQESNPNEAEAEAVKDATPSVEYLATKASPLKNDKRSENHVMPQNEGQQGPSRPPNETDRAKSSDDGGVQDDSPMLDGVSDEPCLKGLDSKKRKRIGQDADNDKAVELPTEGAGDISESQQKGEQEPTPTNKASGKNAKQGPQVSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFDIEGLIPKDILHQRPGPSSALGFPLEMSMAFPPLHPSQPGLIQPTLPSIANSSDILRRTVHPQLASPASGSFKEPNQVPDVWEDELHNVVQMSFATTTAPMSTQDVDGTVAATQMKVEL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04131 539 MobiDBLite consensus disorder prediction 1 15 - -
Arst5g04131 539 Pfam Helix-loop-helix DNA-binding domain 353 401 IPR011598 GO:0046983
Arst5g04131 539 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 225 458 IPR024097 GO:0006355
Arst5g04131 539 SMART finulus 356 406 IPR011598 GO:0046983
Arst5g04131 539 MobiDBLite consensus disorder prediction 175 337 - -
Arst5g04131 539 MobiDBLite consensus disorder prediction 231 246 - -
Arst5g04131 539 MobiDBLite consensus disorder prediction 1 34 - -
Arst5g04131 539 Gene3D - 347 419 IPR036638 GO:0046983
Arst5g04131 539 CDD bHLH_AtBPE_like 340 425 - -
Arst5g04131 539 MobiDBLite consensus disorder prediction 273 297 - -
Arst5g04131 539 FunFam Basic helix-loop-helix transcription factor 347 419 - -
Arst5g04131 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 400 IPR011598 GO:0046983
Arst5g04131 539 MobiDBLite consensus disorder prediction 303 330 - -
Arst5g04131 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 418 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04131 Arst-Chr5 103284843 103289450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04131 48 538 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.366 2.10e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g04131 HLH 6.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04131 - - adu:107491240 1083.17