Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04102 ATGGACAAAGATCATGACATTCACAACTATTCGGCACCCATGCCCCCAACCCCAAGCTTCAACACACTAGACTACTCTCTTGATCATAATCACCACCACCACCATCTCATGCAGTTTCGCCAAGGCGAATCTTCTGGAGAACACAGCAACGGGATAGCCGATTACATCCCTCAGCAACAGCAACAACTGCCGCCAGCACCGCCGCCATCGTGTTTTTATAATGCAAACTCTTCTTCCTTTGATAAGCTCAGTTTCGCGGATGTGATGCAGTTTGCAGATTTCGGACCAAAGTTAGCCTTAAACCAAGGCAAGCCCTGCGAAGAACCGGGGATTGACCCGGTCTACTTTCTCAAGTTCCCGGTCTTAAATGATAAGATGGATGAACACAATATCATGATGATGAATCACGAAAGCGACGGTGGTGGTGGCAGAGAAGAAGTAGAAACAGAAGCAGAAAACAATAATGACGAGAGGTTCAACAACGGGGAAGAGGAAGATGCTGCCATGGGTGGAGCAGATCAAGAAGATGGAAGGATGAAAGGAGAAGAAGAAACTGCACGCATTTCCGAAGACAACAACTCAGTGCAGATTCGGTTCCTTGGCCATGGTGAAGATCTGGTGCTGAACCAGAAGAGGAACAACAATTCATCGGCGTTGATGCAGGAGAACAACAAGAACATGAAGAGGAAGAGGCCGAGAACCGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGCATGACTCACATCGCTGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTTCAAAGGGGTGATCAAGCATCGATAATTGGAGGAGCTATAGAGTTTGTGAGAGAATTGGAGCAACTGCTTCAGTGCTTGGAATCACAAAAGAGAAGAAGGCTACTTGGAGAAGCACAAACAAGACAGGTGGGGGATTCGAATCTCGGAACACAACAGCAGCAGCCTCTTCAACCGCCTTTCTATCCGCCATTGGCATCGCCAAGCGAGCAGATGAAGCTGGTGGAGTTGGAGACCGGACTCCGCGAAGAAACCGCAGAGAGCAAGTCTTGCTTGGCTGATGTTGAAGTGAAGCTTCTGGGATTCGACGCCATGATCAAGATCCTTTCCAGGAGGAGGCCAGGCCAGTTGATCAAAACTATTGCTGCACTTGAAGATCTTCAGTTAATTATCCTTCACACCAACATTACCACCATCGAACAGACAGTACTTTATTCTTTCAATGTCAAGGTTGCTAGTGAGTCAAGGTTCACCGCAGATGATATAGCCGGCTCCGTTCAACAGATATTCAGTTTCATCCATGCAAACACCAGCATATAA 1362 0.4736 MDKDHDIHNYSAPMPPTPSFNTLDYSLDHNHHHHHLMQFRQGESSGEHSNGIADYIPQQQQQLPPAPPPSCFYNANSSSFDKLSFADVMQFADFGPKLALNQGKPCEEPGIDPVYFLKFPVLNDKMDEHNIMMMNHESDGGGGREEVETEAENNNDERFNNGEEEDAAMGGADQEDGRMKGEEETARISEDNNSVQIRFLGHGEDLVLNQKRNNNSSALMQENNKNMKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQTRQVGDSNLGTQQQQPLQPPFYPPLASPSEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASESRFTADDIAGSVQQIFSFIHANTSI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04102 453 MobiDBLite consensus disorder prediction 137 164 - -
Arst5g04102 453 MobiDBLite consensus disorder prediction 224 245 - -
Arst5g04102 453 FunFam Basic helix-loop-helix transcription factor 234 309 - -
Arst5g04102 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 294 IPR011598 GO:0046983
Arst5g04102 453 MobiDBLite consensus disorder prediction 137 187 - -
Arst5g04102 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 310 IPR036638 GO:0046983
Arst5g04102 453 Gene3D - 234 309 IPR036638 GO:0046983
Arst5g04102 453 SMART finulus 249 300 IPR011598 GO:0046983
Arst5g04102 453 Pfam Helix-loop-helix DNA-binding domain 244 295 IPR011598 GO:0046983
Arst5g04102 453 MobiDBLite consensus disorder prediction 171 187 - -
Arst5g04102 453 PANTHER TRANSCRIPTION FACTOR FAMA 159 444 IPR044283 GO:0003700|GO:0010052
Arst5g04102 453 CDD bHLH_AtFAMA_like 246 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04102 Arst-Chr5 102688168 102691956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04102 42 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 57.176 7.20e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g04102 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04102 K26213 - gmx:100813515 547.354