Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04061 ATGATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCTCCGCAAGCAATCCACAACACCATTCAAAGCTACCAAGAACAGTTATTCCTTCAGCAGCAGATGCAGCATCACAACCCAAACGGTACGGATCTTTATATCGGCAGCGGTGGAAGTGGAAGGGGGTTAGTGTTCCCTCCTGAAGCCTCTCCAATCATGCAACCACCATGGTCCATGCCACCGGTTCACCCTTTCAACCAAGCCGGTCCGGTTCACCCGGTCTCCCATCATAATGATAACAATAATAACAACCACGATCCTTTCCTTGTTCCTCCACCGCCTTCGTCGCCATACGCAAGTTTCTTCAATCGAAGGGTCCCGTCTCTGCAGTTCGCATACGAGGGCCCTTCTTCTGAACACCTCAGGATCATATCTGACTCGCTTGTTGGGCCCATGGTTCATCCCGGTTCTGTGGGCCCGTTTGGGCTCCAGGCCGAGTTAGGCAAGATGACTGCCCAAGAAATCATGGAGGCTAAGGCTCTTGCGGCCTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAACTCCGCAGCTTGTTGCCAAACACAACTAAAACAGATAAAGCTTCATTGCTAGCAGAAGTGATTCAACACGTGAAGGAACTGAAGCGTCAAACTTCACTGATAGCAGAAACGAATCCAGTTCCCACAGAATCCGACGAGTTAACGGTGGATACGACGGACGAAGACGGAAGGTTTGTAATCAAAGCGTCTTTATGCTGCGAAGACCGTTCAGATCTCTTACCCGACCTCATCAAGACACTGAAGGAACTCAAGCTGAGAACCCTCAAAGCCGAGATTACCACACTCGGCGGCCGCATGAAGAATGTGTTGTTCATCACGGCGGACGAAGAAGATTATTCTAGTAGCAACGCCGGCAGTGGCGGAGGAGAGCAAAGCCTTCAGCTGGGTCATTATTGTATTAGCTCAATACAAGAAGCGCTGAGGGCTGTCATGGAGAAAGGTGGTGGTGATGAATCTGCTTCTGGGAATGTTAAGAGGCAAAGGACGAATATCAATATCCTTGAACAAAGGTCTTTATGA 1104 0.4928 MMKKEEDQGQCSPQAIHNTIQSYQEQLFLQQQMQHHNPNGTDLYIGSGGSGRGLVFPPEASPIMQPPWSMPPVHPFNQAGPVHPVSHHNDNNNNNHDPFLVPPPPSSPYASFFNRRVPSLQFAYEGPSSEHLRIISDSLVGPMVHPGSVGPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETNPVPTESDELTVDTTDEDGRFVIKASLCCEDRSDLLPDLIKTLKELKLRTLKAEITTLGGRMKNVLFITADEEDYSSSNAGSGGGEQSLQLGHYCISSIQEALRAVMEKGGGDESASGNVKRQRTNINILEQRSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04061 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 231 IPR036638 GO:0046983
Arst5g04061 367 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
Arst5g04061 367 CDD bHLH_AtAIG1_like 168 245 - -
Arst5g04061 367 Gene3D - 168 229 IPR036638 GO:0046983
Arst5g04061 367 SMART finulus 179 228 IPR011598 GO:0046983
Arst5g04061 367 PANTHER TRANSCRIPTION FACTOR BHLH30 35 359 IPR045847 GO:0003700|GO:0006355
Arst5g04061 367 FunFam transcription factor bHLH30 168 231 - -
Arst5g04061 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04061 Arst-Chr5 102130551 102134986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04061 18 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.882 4.25e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g04061 HLH 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04061 - - cave:132184452 436.032