Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04050 ATGGCAGGAGCATCATGGTTGGTGGACAAAAGCAGAATTGCAACCAAAATCAAGAGTGCATCAGGAGCTTGTGATCCTAACGAAGTTATTTGGAAAACCAATCCTACCAGGATTTGCCCGAATTGTCATCATCCTATTGACAATAGTGATGTAACTCAAGAGTGGCCTGGCTTACCAAAAGGGGTTAAATTTGATCCGTCAGATCAAGAGATAATCTGGCACTTGCTTGTAAAGGCTGGTGTAGGAAATTTAAAACCTCATCCTTTCATTGATGAGTTTATTACTACCCTTGAAGTGGATGATGGGATTTGTTATACTCATCCTCAACATTTACCTGGTGTCAAGCAAGACGGAAGGGCCTCACATTTCTTCCACAGAGCAATAAAGGCTTATAATACCGGCACGCGAAAGCGTCGAAAAGTACATGGTCAGGATGACGTTCGTTGGCACAAGACTGGAAGGACTAAACTGATCACCCTGAACGGGGTTCCAAAGGGTTGCAAAAAAATCATGGTTTTGTATACAAATGCGGTGAGAGGAGGAAAGTCGGTGAAAACTAATTGGGTTATGCACCAATATCACCTTGGGACAGAAGAAGATGAAAAGGAAGGAGCATATGTTATTTCTAAAGTGTTTTATAAAGATGACCAGGATATACCTGAAGCCGCAGAAAGTAAAAATGCAACAGTTGCGAAAGTAGATCCAGTCACTCCCAAATCCACGACTCCTGAACCTCCTCGTAATGAAAGGCAAGATTCAGATCTAGGCCTGGATCTAGACCTAGGGCAAGAAGCACTTGCTTTTACTGAGATGGATTGCTTAGATGAAATTCAAGCTGACTGTGAAGAATCTGCGAAAGCTAATCCACCAGTACTGGAGACACAAGAAAATGAAGGGATGGACAACAAGGAAACTAATGCTTATGAAGCACAACCGTGGTGGGATAGTGATTCACAGAATCTATTAGATTCACAACAACTCGTTGAAGCATTAACTCTCTGCGAAGATATATTTCACAGCCAATCTTCCAACAAAGACGATGAAAATGATAAGAACCAAACCGGTCTATCGGTGTATGCTCATCTAGGACCAGAGCATCTGAAGAAGGATATTGAGGAGTGTCAAAAGCTTGCTCCTGCAGGACCAGAGCATCAGAAGGATATTGAAGACGGCCAAAATCTTGACATCGACCTTGCAAATATAGAGCGGGATACTCCTCCTGAGCATCGACTAAGTCAGCTGGAATTTGGTTCGCAGGACAGCTATACTTACTGGGGTTTTCAAGGCGTAAACTAA 1296 0.4275 MAGASWLVDKSRIATKIKSASGACDPNEVIWKTNPTRICPNCHHPIDNSDVTQEWPGLPKGVKFDPSDQEIIWHLLVKAGVGNLKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGRASHFFHRAIKAYNTGTRKRRKVHGQDDVRWHKTGRTKLITLNGVPKGCKKIMVLYTNAVRGGKSVKTNWVMHQYHLGTEEDEKEGAYVISKVFYKDDQDIPEAAESKNATVAKVDPVTPKSTTPEPPRNERQDSDLGLDLDLGQEALAFTEMDCLDEIQADCEESAKANPPVLETQENEGMDNKETNAYEAQPWWDSDSQNLLDSQQLVEALTLCEDIFHSQSSNKDDENDKNQTGLSVYAHLGPEHLKKDIEECQKLAPAGPEHQKDIEDGQNLDIDLANIERDTPPEHRLSQLEFGSQDSYTYWGFQGVN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04050 431 SUPERFAMILY NAC domain 43 214 IPR036093 GO:0003677|GO:0006355
Arst5g04050 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 375 IPR044799 GO:0003700
Arst5g04050 431 MobiDBLite consensus disorder prediction 223 256 - -
Arst5g04050 431 Gene3D NAC domain 67 218 IPR036093 GO:0003677|GO:0006355
Arst5g04050 431 FunFam NAC domain-containing protein 8 67 218 - -
Arst5g04050 431 ProSiteProfiles NAC domain profile. 58 214 IPR003441 GO:0003677|GO:0006355
Arst5g04050 431 Pfam No apical meristem (NAM) protein 59 195 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04050 Arst-Chr5 102021056 102025550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04050 14 214 NAC Transcription Factor Family AT1G28470 51.887 3.69e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst5g04050 NAM 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04050 - - adu:107491284 899.427