Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04044 ATGGATGCAACAAGTTCCGTAGATGAAAGCACCACGTGCACAAATGACTCGCTTTCCATAACCCTAACCCCGGCGACACCCGCGTCGCCATTCACCGCCACATCGAAGAAGCTGTCACCGCCGCCACCAAACAGCTTATGTCGTGTCGGCAGCGGTGCCAGCACAATCGTGGATCCGGACGTCGGTGGCGGCGTCACCGAAGTGGAGTCACGAAAACTCCCTTCCTCCAAGTATAAAGGTGTGGTTCCCCAACCAAACGGACGTTGGGGCGCTCAGATTTACGAGAAGCATCAACGCGTTTGGTTGGGGACCTTTAACGAGGAGGACGAGGCCGCTAGAGCCTATGACATCGCAGCACAACGGTTTCGTGGCAAGGATGCCGTCACCAACTTCAAGCCCCTCGGCAGTGTTGTGTCCAACAACACCGCGGTCGAGGACGAGGATTTCGAGAGCGAGTTTCTCAACTCGCATTCAAAATCCGAGATCGTGGACATGCTGAGAAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGGAGCCGCGGCCTCATAGGGCGGCGGCTCAACCGAGCTGCGGGTAACGGAGGTTCCGCGGGGATGATGTCTTCATCCGGCGCGTGTGGAGGGAAGGCGCGTGAGCAGTTGTTCGAGAAGGCCGTTACGCCAAGTGACGTGGGAAAACTGAATCGGTTAGTTATACCAAAACAACACGCGGAGAAACACTTTCCCTTACAAAACGGTTGCGGCGGAGCTGGCGGCGGAGTAGTTACGGCGGCGAAGGGCGTTTTGCTGAACTTCNNNNNNNNNNNAGGAAAAGTGTGGCGGTTTCGTTACTCGTACTGGAACAGTAGCCAGAGCTACGTGCTAACGAAAGGCTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGACACGGTTTGTTTCCACCGGTCCACTGGACCGGACAGGCAACTGTTTATAGACTGGAAGGCGAGGAGTGTTGGTAATGATGGGGTTGGGTTTTTTGGACCGATTGGACCGGTTTTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGTGTTAACATTTTAAAGCTTCCTGGATCTGATGCCGGTGATAGCAATAACAATAATATTCTGAATATCAATAATGATAATAATGTTGCTGGTTCAATTGGTGGGTGCTTCAATGGGAAGAGAAAAGAGATGGAACTGTTTACGTTGGAGGGTAGCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1248 0.5256 MDATSSVDESTTCTNDSLSITLTPATPASPFTATSKKLSPPPPNSLCRVGSGASTIVDPDVGGGVTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLGSVVSNNTAVEDEDFESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGLIGRRLNRAAGNGGSAGMMSSSGACGGKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGCGGAGGGVVTAAKGVLLNFXXXXGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLFIDWKARSVGNDGVGFFGPIGPVLEPVQMVRLFGVNILKLPGSDAGDSNNNNILNINNDNNVAGSIGGCFNGKRKEMELFTLEGSKKPKIIGAL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04044 415 SUPERFAMILY DNA-binding pseudobarrel domain 215 325 IPR015300 -
Arst5g04044 415 FunFam AP2 domain-containing protein RAP2.8 76 133 - -
Arst5g04044 415 Gene3D - 205 334 IPR015300 -
Arst5g04044 415 MobiDBLite consensus disorder prediction 1 41 - -
Arst5g04044 415 CDD AP2 76 131 IPR001471 GO:0003700|GO:0006355
Arst5g04044 415 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 72 369 IPR044800 GO:0003700
Arst5g04044 415 ProSiteProfiles AP2/ERF domain profile. 77 132 IPR001471 GO:0003700|GO:0006355
Arst5g04044 415 Gene3D AP2/ERF domain 76 133 IPR036955 GO:0003700|GO:0006355
Arst5g04044 415 Pfam B3 DNA binding domain 217 326 IPR003340 GO:0003677
Arst5g04044 415 CDD B3_DNA 216 314 IPR003340 GO:0003677
Arst5g04044 415 MobiDBLite consensus disorder prediction 1 45 - -
Arst5g04044 415 SMART B3_2 217 329 IPR003340 GO:0003677
Arst5g04044 415 ProSiteProfiles B3 DNA-binding domain profile. 217 328 IPR003340 GO:0003677
Arst5g04044 415 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Arst5g04044 415 SMART rav1_2 77 138 IPR001471 GO:0003700|GO:0006355
Arst5g04044 415 SUPERFAMILY DNA-binding domain 76 132 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04044 Arst-Chr5 101872524 101874008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04044 5 415 B3 DNA Binding Superfamily AT1G25560 56.802 3.04e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Arst5g04044 B3 2.1e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04044 K09287 - gmx:100801107 565.459