Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04040 ATGCAAACTCATCATCACTCTTTCTCATCCTACATATCCTCTTGTGGGAGTAGTAGTACTACTAGTCCCTTCTTGGACAATCCCGAAGATGCCGATGTTGTGCTTCTTGATGACGAAGAAGCCTCCATTTCCCTTTCTCTTGGGCCTCCCGGCCAACATCACAACCCCAAGATCTCTACAACTTCACCACTACTGCACCATAACCATTACAATCCCAACCCTAACTGTGATGATGACCAGAGTGGTGTAACCGTTGCTCTACACATTGGCCTTCCTTCCACGACAACAACAACTGCACCCAACACCACCACCACCATCAGCACCACAACAAGTAAAACTGATACCCTTCAGGGTCAGTACTGGATCCCTTCCCCTGCACAAATCCTCATTGGTCCCACTCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAATCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGGAAAGGACCAGAATCATTAAGAGGAGCAAAGCCAGCATCTTCAATGCTGAGGCTACCATGCTATTGTTGCGCGGAAGGTTGCAAGAACAACATAGAGCACCCAAGATCAAGGCCTCTCAAGGATTTCAGGACACTGCAGACTCACTACAAGAGAAAGCATGGCGCCAAGCCCTTCGGCTGCCGCAAGTGCGGTAAGCCCTTCGCCGTCCGAGGAGATTGGAGGACGCACGAGAAGAATTGCGGCAAACTTTGGTTTTGCATATGTGGCTCCGATTTCAAGCACAAGAGGTCCCTCAAGGACCATGTCCGCGCCTTCGGCGACGGCCATGCTCCTCATACTGTGGAAAGCTGTGACCAGTTCGTCGATGAAGAAGAAGATGATTATGAACTTGATGATGACGACGACCTAGACTTAGAAGATAATAACAACAATAATAGTAACGGCAATCAAGCAGAACTTCCTGTTATTGCAGATGGTGAATTTGACGTGGGAATGGAATTTAATTCCAAAAAAGCTATCGTTACAACGATGAAAGATTATACCATTCATATAGGTGTAGACTATCAAGTATATGAGTCAGAACTAATGACATTTTATGCCAAATGTACACAATATGCCTCAGGATGTAATTGGTTGATCAGTGTTAGCATGATCCGCAGGAAGTACTGTTGGGTTATAAGGAGGTATAATAGTAGCCACATGTATACTAAAGCCACAATTTCTCAGGACTATTCGAAGCTAAAGTCCAACACAATTGCAGAAATAATAAAGCCGTTGGTAGAGGCAAACCCGCCTATAAAGGTGAAATCAGTTATTGCGAAAATACAGTCGAAGTTTAATTACACCATCAGTTATTGCAAGCATGGTTGGCAAAGAGAAAATCAGTGA 1374 0.4476 MQTHHHSFSSYISSCGSSSTTSPFLDNPEDADVVLLDDEEASISLSLGPPGQHHNPKISTTSPLLHHNHYNPNPNCDDDQSGVTVALHIGLPSTTTTTAPNTTTTISTTTSKTDTLQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQFVDEEEDDYELDDDDDLDLEDNNNNNSNGNQAELPVIADGEFDVGMEFNSKKAIVTTMKDYTIHIGVDYQVYESELMTFYAKCTQYASGCNWLISVSMIRRKYCWVIRRYNSSHMYTKATISQDYSKLKSNTIAEIIKPLVEANPPIKVKSVIAKIQSKFNYTISYCKHGWQRENQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04040 457 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Arst5g04040 457 PANTHER ZINC FINGER PROTEIN WIP2 24 292 IPR043584 GO:0003700|GO:0010468
Arst5g04040 457 MobiDBLite consensus disorder prediction 292 313 - -
Arst5g04040 457 MobiDBLite consensus disorder prediction 1 26 - -
Arst5g04040 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Arst5g04040 457 Gene3D Classic Zinc Finger 178 267 - -
Arst5g04040 457 FunFam Zinc finger protein WIP2 189 271 - -
Arst5g04040 457 SUPERFAMILY beta-beta-alpha zinc fingers 203 240 IPR036236 -
Arst5g04040 457 SUPERFAMILY beta-beta-alpha zinc fingers 128 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04040 Arst-Chr5 101829156 101837568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04040 36 276 C2H2 Transcription Factor Family AT1G13290 72.065 1.18e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst5g04040 DBD_Tnp_Mut 2.1e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04040 - - adu:107490921 846.269