Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04038 ATGGGTCGTGGAAGACTATCAATGGAGCTAATTCAGAAAGAAAAAGCTAGGAAGACAACATTTGTAAAGAGAAAGAATGGATTAATGAAGAAAGTGGACGAGTTCTCCACTCTTTGTGGTGTTGATGTTTGTTTAATTATCTATGGCCCCAACTTTGATGGTCAAAGACCCACCAAACCTGAGACATGGCCCCAAGACACCGACCAGGTACGCCGAATCATTCAAAAGTACCATAACACAACAAGTGATAGACCTCCTAGGATCTATGATATTGAAAAGTATTATAGAGATAGGGTTAAGAAAGTTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGGAGAAGCTTAAGCCCAAGATCACATATCCTACTTGGGATACCTCATTCAATGATCTTAGGGAAGACCAACTGATAATGTTTGCTGGAATTTTGGATTCTAAGATTGTGTCTTGCAATCAAAGAATCAACATGCTAAAGCAAAATCCCAAGGGAAAAGCAATAATGGTAGAATCAAAAGACAATGTTGATGAGAATGTTTTTGCTACTCTTTACTTGGCTTCATCAAACCCTAGTAGCTACCTTAATTTTATGCCAAACAAGGGGAAGTTCATCACAATCTTCCACTCTTCATTTTGA 636 0.3852 MGRGRLSMELIQKEKARKTTFVKRKNGLMKKVDEFSTLCGVDVCLIIYGPNFDGQRPTKPETWPQDTDQVRRIIQKYHNTTSDRPPRIYDIEKYYRDRVKKVEGEISKVHKEKEKLKPKITYPTWDTSFNDLREDQLIMFAGILDSKIVSCNQRINMLKQNPKGKAIMVESKDNVDENVFATLYLASSNPSSYLNFMPNKGKFITIFHSSF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04038 211 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Arst5g04038 211 CDD MADS 2 51 - -
Arst5g04038 211 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Arst5g04038 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst5g04038 211 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Arst5g04038 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Arst5g04038 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst5g04038 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst5g04038 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst5g04038 211 PANTHER MADS BOX PROTEIN 3 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04038 Arst-Chr5 101783154 101783878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04038 1 154 Type I MADS-box Gene Family AT5G55690 37.580 6.33e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst5g04038 SRF-TF 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04038 - - adu:107490923 422.935