Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03918 ATGGTGAGGTCTCAGGGCTATGACAAAATTAGTGTCAAAAGGGGTGTTTGGAGTCCAGAAGAAGATGCAAAGATAGTTGCATTTGTGTCAAAGCATGGACCTAGTAACTGGACTTCTGTCCCAAAAAAAGCGGGGCTCAAGAGGTGTGGAAAGAGTTGCAGGTTCCGGTGGACTAATTATCTCAGACCTGATCTTAAGCAAGACACGTTTACATCCCAGGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGAAGCAGGTGGTTCATAATAGCCCAGCAACTCCCTGGGAGAACAGACAATGATGTGAAGAACTACTGGAACACAAAGTTGAAAAAGAAGCTCTCTCAAATGGGAATAGACCCTGTTACTCATAAGCCATTCTCAAAGCTACACATCCAAGCCACCAATAGTCAGTTTCTCATCCTCAGTCACCTCCCTCGATTTTTAGTATCCCCCTGA 465 0.4452 MVRSQGYDKISVKRGVWSPEEDAKIVAFVSKHGPSNWTSVPKKAGLKRCGKSCRFRWTNYLRPDLKQDTFTSQEEDLIIKLHAAIGSRWFIIAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLHIQATNSQFLILSHLPRFLVSP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03918 154 CDD SANT 69 112 IPR001005 -
Arst5g03918 154 FunFam Transcription factor RAX3 7 67 - -
Arst5g03918 154 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Arst5g03918 154 Gene3D - 68 135 - -
Arst5g03918 154 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Arst5g03918 154 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 116 IPR017930 -
Arst5g03918 154 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Arst5g03918 154 FunFam Os07g0634900 protein 69 128 - -
Arst5g03918 154 PANTHER F14D16.11-RELATED 1 139 - -
Arst5g03918 154 CDD SANT 17 61 IPR001005 -
Arst5g03918 154 Gene3D - 7 67 - -
Arst5g03918 154 SMART sant 13 63 IPR001005 -
Arst5g03918 154 SMART sant 66 114 IPR001005 -
Arst5g03918 154 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Arst5g03918 154 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Arst5g03918 154 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03918 Arst-Chr5 100230104 100234415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03918 1 139 MYB Transcription Factor Family AT5G56110 63.309 2.45e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst5g03918 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03918 K09422 - pvy:116111059 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03918 5 100230104 100234415 Arst10g00447 10 3598969 3603697 PCT