Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03896 ATGTCTTCTCCAACACCAACCATGGATCCCTCTTCACGCCACTACTCCTACAATCGCAAACAGAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAAATTGTATAATAAGGACAGCATCCACTTGATCGGCCTCGACGATGCAGCTTCTCGATTAGGTGTTGAGAGGCGGCGGATCTATGATATAGTGAACGTCTTAGAGAGTGTCGGGGTGCTTTCTAGAAAAGCTAAGAATCAGTATACTTGGAAAGGGTTTGCTGCTATTCCTGGGGCTTTACAAGAACTCAAGGACGAGGGTTTGAGGGAGAATCCCTATGGTTTTGACGGTGATAATGAAATTGCAAAATTGTCAGATGACGAGGATGACGAAGAAACAATGTCAAATCCCAGTAATGGAAGTCAGAATGACAAATCAAATCCCAATGCCTCACTTACAAAATCATTGAAGCCTGAAAACAGAAGGGAAAAATCTCTGGCGCTTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATATCGAAATGATTTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGAACAAAAGTCAGACGCTTATATGATATTGCAAATGTTTTGTCCTCCATGAATCTAATCGAGAAGACCCATACAACAGACACAAGAAAACCAGCATTCAGGTGGCTTGGTTTAAGAGGGAAACCATGGAGTGAGTCAGGTGACTCTGCTCTAAATTCGAATCACAGTGGCGAATCAAGGAAAAGGATGTTTGGTGAAGACATCACCAACATTAGCTTCAAGAGGAACAAAGTGGATCCGTTTATGAATGCTGAGAATAGCTGCAAGAGTTACTCCAAGATTCAAGACCAACTCGAAAACGATGATGATAGTTGTTGGCAAGCTCACACGGATAAAGGCATCGTGAAACAAGAAAGAAAACAGAATTCAAAGGGCTACCATTTTGGTCCTTTTGCTCCAGAGTATGTTTCCAAGAATGGTGGAGCCTCTGAGAATACTAATGTGAAGCAGGTTCATGATTGGGAGAGTCTCTCAAATGTGTATCGTCCTCGGTATCAAAATCAAGCTTTGAGAGACCTCTTCTCCCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCAGGGAAAAGGCCAATACAAATTTTATAG 1182 0.4213 MSSPTPTMDPSSRHYSYNRKQKSLGLLCTNFLKLYNKDSIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGALQELKDEGLRENPYGFDGDNEIAKLSDDEDDEETMSNPSNGSQNDKSNPNASLTKSLKPENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKPWSESGDSALNSNHSGESRKRMFGEDITNISFKRNKVDPFMNAENSCKSYSKIQDQLENDDDSCWQAHTDKGIVKQERKQNSKGYHFGPFAPEYVSKNGGASENTNVKQVHDWESLSNVYRPRYQNQALRDLFSHYMEAWKSWYSEVAGKRPIQIL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03896 393 PANTHER TRANSCRIPTION FACTOR E2F 11 361 IPR015633 GO:0000978|GO:0006357
Arst5g03896 393 MobiDBLite consensus disorder prediction 101 153 - -
Arst5g03896 393 FunFam E2F transcription factor 8 14 86 - -
Arst5g03896 393 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
Arst5g03896 393 FunFam E2F transcription factor-like E2FE 148 235 - -
Arst5g03896 393 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Arst5g03896 393 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
Arst5g03896 393 MobiDBLite consensus disorder prediction 127 147 - -
Arst5g03896 393 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Arst5g03896 393 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Arst5g03896 393 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Arst5g03896 393 Gene3D - 14 86 IPR036388 -
Arst5g03896 393 Gene3D - 149 235 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03896 Arst-Chr5 100021968 100028018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03896 14 390 E2F-DP Transcription Factor Family AT3G48160 58.793 1.01e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst5g03896 E2F_TDP 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03896 K09391 - qsa:O6P43_030916 523.857