Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03884 ATGGGCGGCAACGGCAAGCACCGTTGGAGAATTTCGTTCCATCGTAATTCGAAGCTGGAGCAACAGCAGCCCAAGCATCCCCCTCCGAACGAATTCATATGCCCCATTTCCGGTTCATTAATGTCCGACCCGGTCGTCGTCGCTTCCGGACAAACCTTCGAGCGCCTTTCCATCCAAGTCTGCAACGACCTCTCCTTCTCCCCCACCCTACCCGACGGAACCCGACCCGATTTCTCAACCATTATCCCCAATCTTAACATCAGGACCAGCATCCAAAACTGGTGCCGTAAAACCAAGACCGTACACCCGCCCGCACCGGATTACTCCTCACTCGAGCGCATCGTCAAGGACGCAATGGCCGCTGCAGCTCCTCCGCCCCCTCCGTCGGAGCCTGACCTTAGGGTTTCTGAAAAGGAGCTCCTGAAGGCGGTGCCGGACAATCCGCCGGTGATATTCTCCCACGCCGCCACTGAGTTAGGTCCCCGAGTCAACCACTTCAACTCGGGATCCTCCGAGGAGTCCGTCGTCATCGGTGGCGCGAGTCCGGGTACTCCGCTTCCGTTCACGGTTCGGCCGACGTGCTTCTCGTCGTCGTCCTCCGTCTCCTCCGTTGAAATTACGGAGGTCGAGATCCAAGGGCAAAACCCTAGCGGACCTCTTTCAGAGGAAGAAGAAAAGCTCGTGGCGAAGATGAAGAGCAACGAGGTCTTCGAGCAGGAAGAAGGAGCGATCTCGCTTCGGAACCTCACGCGGAGCAGCGAGGAAGCAAGGGTTTCACTCTGCACGCATCGAGTCCTCTCCCCTCTGCGTTCTCTCGTAGCATCGAGGTACGGCGTCGTGCAGGTCAACGCTGTTGCTTCACTGGTCAACCTTTCGCTTGAGAGACAAAATAAGGTGAGGATCGTGCGGTCAGGATTCGTTCCGTACCTGATCGACGCGCTCAAGGGTGGATCCTCTGAGACGCAGGAACACGCTGCAGGTGCGCTTTTCAGTTTAGCGTTGGATGATGATAATAAGATGGCGATTGGGGTCCTCGGCGCGTTGCAGCCTCTTATGCACGCGCTCCGATCCGAGTCCGAGCGAACTCGGCATGACTCGGCACTCGCGCTGTACCACTTGACCCTGGTTCAGAGCAACCGGGTCAAGCTTGTGAAACTCGGCGTGGTCTCCACCTTGCTGTCGATGGTGAAATCTGGAACCTTAGCGAGTAGGGTTCTGTTGATTCTTTGTAACCTTGCGGTTTGCATGGAAGGGAGGACGGCGATGTTGGATGCTGATGCGGTGGAGTGTTTTGTGGGATTGTTGAGGGAGAACGAGTTGGACTCGGAGTCAACTCGGGAGAACTGTGTGGCGGCGCTGTATGCGCTGAGTCACAGGAGCCTGAGATTCAAGGGGCTGGCTAGGGAGGCGAGGGCCATGGAGGTGCTGAAGGAGGTGGCGGAGGTGACGGGGACCGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGGGCTGCCGGTGATGGGGATGATGATGGGTCGGAGCATGATGGGGTTTTGGAATCCGGCGGGTTGACTCGGATGAGGTACCGCGGCAGTGGTGGCAGGAACAATGCCAACACCACGACGTTCTAG 1623 0.5761 MGGNGKHRWRISFHRNSKLEQQQPKHPPPNEFICPISGSLMSDPVVVASGQTFERLSIQVCNDLSFSPTLPDGTRPDFSTIIPNLNIRTSIQNWCRKTKTVHPPAPDYSSLERIVKDAMAAAAPPPPPSEPDLRVSEKELLKAVPDNPPVIFSHAATELGPRVNHFNSGSSEESVVIGGASPGTPLPFTVRPTCFSSSSSVSSVEITEVEIQGQNPSGPLSEEEEKLVAKMKSNEVFEQEEGAISLRNLTRSSEEARVSLCTHRVLSPLRSLVASRYGVVQVNAVASLVNLSLERQNKVRIVRSGFVPYLIDALKGGSSETQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVSTLLSMVKSGTLASRVLLILCNLAVCMEGRTAMLDADAVECFVGLLRENELDSESTRENCVAALYALSHRSLRFKGLAREARAMEVLKEVAEVTGTERAREKAKRILQMMRAAGDGDDDGSEHDGVLESGGLTRMRYRGSGGRNNANTTTF 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03884 540 SUPERFAMILY RING/U-box 24 102 - -
Arst5g03884 540 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Arst5g03884 540 FunFam RING-type E3 ubiquitin transferase 222 499 - -
Arst5g03884 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 305 342 IPR000225 GO:0005515
Arst5g03884 540 Gene3D - 220 402 IPR011989 -
Arst5g03884 540 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Arst5g03884 540 PANTHER U BOX DOMAIN-CONTAINING 22 500 - -
Arst5g03884 540 Pfam Armadillo/beta-catenin-like repeat 296 333 IPR000225 GO:0005515
Arst5g03884 540 Pfam Armadillo/beta-catenin-like repeat 335 374 IPR000225 GO:0005515
Arst5g03884 540 SMART arm_5 415 458 IPR000225 GO:0005515
Arst5g03884 540 SMART arm_5 335 375 IPR000225 GO:0005515
Arst5g03884 540 SMART arm_5 294 334 IPR000225 GO:0005515
Arst5g03884 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Arst5g03884 540 SUPERFAMILY ARM repeat 226 499 IPR016024 -
Arst5g03884 540 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Arst5g03884 540 Gene3D - 403 506 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03884 Arst-Chr5 99842976 99845373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03884 1 537 U-box Gene Family AT5G65200 56.172 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03884 - - aip:107643932 1007.67