Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03871 ATGACTCCGAATAATCCCCATTCCCATCCACCCCCCGATCCCCGCCGTCCCCTATCATTCGCAGCGGTCCACCCCTCCGACACCATCTCTCCTGCCACACTCCTCTCCTCCCTTCTCACCCTCTCCCAATCCATCCTCAACACCACCACCTTCTTCACACAACGCCGCAACGCCCGTGAGGCCACGCGCCAAGTCTCCCTCCTCCTCATCTTCCTCCAAGACCTCCACGCTTCCCTCCTCCCAAACGACGCCGTTCCCTCCCTCTCCGACCTCCACTTCTCCTTCCAGAATCTTCACTTCCTCTTACAAGATTGCTCCCGCGAAGGTGCCCGCCTCTTCATGCTTCTCAAGTCCCGCCACGTGGCATCCCAATTACGGTCACTCTTTCGCACTATCGCTGCCACCCTCGACGCGCTGCCCCTCCACGTCATCAAAGTTTGTTGGGAAGTTAGAGAGTTAGTTGAGTTAGTTAGGAAGCAAGCCAGGAAAGTCACCTTCGAACTCGATCCGGAAGACCAAACCGAAGCCCAACGAGTTAACTCGGTTTTGCAGCAGTTCGAGAGAGGAATCGAGCCTGATTTAAACGCCATGAAGCGAACCCTCACCTACCTCGAAATCAAGACATGGATCGATTGTAACAGAGAGGTGAAGTTTCTAGAAGACGTGATGCTCTCTTCCGCATCCTCTGTTTCCGACGAAGAAGAGGTTTCCTTGTTGAGCGGTTTGATTTCGTTCTTGTGTTACTGCAGAGGAGTGATATTCGAAGACGTTGATTTCCCGTCTCTTCATGAAAATTCCCAATCCGAGGGAAGGAGCAGCGGTGGCAGTGAAGAGTTGAGCTGCGAGAAGCGGCCGCCGGAGGATTTCCGGTGTCCGATCTCACTGGAGTTGATGATTGATCCGGTGACTACTTCCACCGGCCAGACTTACGACCGCATCTCGATTCAGAAATGGCTTAAAGCTGGAAACAGAGTGTGTCCCAAAACAGGGGAGAGGCTCACCAACACAGAGTTGGTTCCAAACACGACACTGAAAAGGCTCATCCAACAATTCTGTGTTGATAATGGCATCTCGGTAGCCAAGCCAAGCAACCGGAGTCACCAGCGCAGTGGAGTATCAGCCGAGGCTGGTAGTCCAGCAGCGGCGCACGCCGTACAGTTCCTCTGCTGGTTTCTTGCCCGGAAACTCGCCTTTGGAACAGAGGAGCAACAGAACAAGGCTGCTTACGAGGTTCGCCTGCTCGCGAGGTCTAACGTTTTCAACCGGACGTGTTTGGTTGAGGTTGGGACCGTGCCGCCTTTGATTGATCTTCTTAGCACCGGTGACAGAACAGTGCAAGAGAATGCAATTGCTGCACTGTTGAAGCTCTCGAAGCATAGCAGTGGCCAGCAATGTATAATGGAGAGCAGGGGTTTGGCGCCAATTCTCAAAGTGCTAAATAGAGGGCTTAGCTTGGAATCTCGCCAAATGGCAGCTGCTACCATATTCTATCTTTGTTCCGTGAAAGAATTTAGAAAAATCATTGGAGATAATCCGGAGGGGATTCCCGGTTTGGTGGAGATGATCAAAGAAGAAAGAAAAACAATCCATTCTTGTTTAGCTGGCAAGGATAGGCTATATAGATCAGACGATGCTATAATGTGTGGGAAGAAGAATGCTGTGGTTGCGATTTTTGGGCTGCTCTTACATCCCCAGAATCACTCAAAAGTGCTGGCAGCCGGAGCGGTTCCTGCAATTGTTAGTGTGTTATCTTCTTCCTTGGACAAAGCTGGTCTCGTCACGGATTGCCTAGCAGTTCTAGCTGCATTGGCCGAGACAGCCGAGGGAGCGAGGGCCGTGTTAGAAGCTGACGCATTGCACTTGATCATTTGGATCTTGAAGTCCGAAACCTCGCGTGTGGCAAAGGAGCACTGCGTGTCGATTTTGTTGTCTCTTTGTGTTCATGGTGGTTCAGGGGTTGTAGCTTTTCTTGTTGCGGAATCTTCAATCATGCCTTTGCTATATTGGATCATCACTGATGGTACCCCTCATGCTGCAAAGAAAGCACGCTCCCTCATCAGAGTTCTACAGGAATTCAATGAACAAAGAACTTCTGGATTGGTTGGGTCCTCATCAGTTTTGCGACAACCATTGATTCACATGAGTTAG 2148 0.5102 MTPNNPHSHPPPDPRRPLSFAAVHPSDTISPATLLSSLLTLSQSILNTTTFFTQRRNAREATRQVSLLLIFLQDLHASLLPNDAVPSLSDLHFSFQNLHFLLQDCSREGARLFMLLKSRHVASQLRSLFRTIAATLDALPLHVIKVCWEVRELVELVRKQARKVTFELDPEDQTEAQRVNSVLQQFERGIEPDLNAMKRTLTYLEIKTWIDCNREVKFLEDVMLSSASSVSDEEEVSLLSGLISFLCYCRGVIFEDVDFPSLHENSQSEGRSSGGSEELSCEKRPPEDFRCPISLELMIDPVTTSTGQTYDRISIQKWLKAGNRVCPKTGERLTNTELVPNTTLKRLIQQFCVDNGISVAKPSNRSHQRSGVSAEAGSPAAAHAVQFLCWFLARKLAFGTEEQQNKAAYEVRLLARSNVFNRTCLVEVGTVPPLIDLLSTGDRTVQENAIAALLKLSKHSSGQQCIMESRGLAPILKVLNRGLSLESRQMAAATIFYLCSVKEFRKIIGDNPEGIPGLVEMIKEERKTIHSCLAGKDRLYRSDDAIMCGKKNAVVAIFGLLLHPQNHSKVLAAGAVPAIVSVLSSSLDKAGLVTDCLAVLAALAETAEGARAVLEADALHLIIWILKSETSRVAKEHCVSILLSLCVHGGSGVVAFLVAESSIMPLLYWIITDGTPHAAKKARSLIRVLQEFNEQRTSGLVGSSSVLRQPLIHMS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03871 715 SUPERFAMILY RING/U-box 280 359 - -
Arst5g03871 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 574 618 IPR000225 GO:0005515
Arst5g03871 715 PANTHER U BOX DOMAIN-CONTAINING 55 689 - -
Arst5g03871 715 Pfam Armadillo/beta-catenin-like repeat 421 457 IPR000225 GO:0005515
Arst5g03871 715 Gene3D - 538 705 IPR011989 -
Arst5g03871 715 Gene3D - 368 536 IPR011989 -
Arst5g03871 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 359 IPR013083 -
Arst5g03871 715 SUPERFAMILY ARM repeat 395 692 IPR016024 -
Arst5g03871 715 FunFam RING-type E3 ubiquitin transferase 365 700 - -
Arst5g03871 715 FunFam RING-type E3 ubiquitin transferase 285 357 - -
Arst5g03871 715 MobiDBLite consensus disorder prediction 264 287 - -
Arst5g03871 715 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Arst5g03871 715 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Arst5g03871 715 SMART arm_5 459 500 IPR000225 GO:0005515
Arst5g03871 715 SMART arm_5 563 605 IPR000225 GO:0005515
Arst5g03871 715 SMART arm_5 418 458 IPR000225 GO:0005515
Arst5g03871 715 CDD RING-Ubox_PUB 286 338 IPR045210 -
Arst5g03871 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Arst5g03871 715 Pfam U-box domain 286 355 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03871 Arst-Chr5 99632701 99635267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03871 15 698 U-box Gene Family AT1G10560 38.395 1.31e-156 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03871 - - adu:107491382 1320.45