Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03826 ATGGAGATTCAGCAGACCCTAAAGCTCATGGTCCACCACCACAACAGAGGAAAGGAAAACAACACACCAAAGCTGAAATGGAGGAAAATTTTCACTCTCCAACGATCACCGCCGTCATCAAAACCCATCCAAACTCCACCGCCGGAAGAGTTCATCTGCCCAATCTCCGGTACTCTAATGGCTGACCCTGTGATCGTATCTTCCGGTCACTCCTTCGAACGAGCGTCCGTACAATCATGCAAAGATCTCAACTTTACCCCTCAACTCTCCGATGGAACCACCCCTGATTTTTCCACCGTGATCCCCAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCGTCATCCACCCTCCTCCCTCAACCCCCACACCGGTCCCTCACCGACAACCTCGTACGGACCCTCATTTTCTCATCTTCCTCCCGCAAAAACAACGCAAACGAGTTAGTGGGAGAGAGAATGCTAACAGCGAACCCTTCTTGTTGTTCTTCTTCTTCCTCCGTTGAGTCTATTGCCACGTCAGCATCAAGCTCCACCCCACCGGCTCAACTTACTGCAAAACCAAGCTTCTGCTACTCTTCACCTTCTTCCTCCGAACTCGAACCAACAACCCCAGAGGCCGAAGAATTCATCTCGAAGCTTCGGAGCAATCAAGTCTTCGTAATCGAAGAATCTCTGCAGAATCTGAGGAAGCTCACTAGAACTAATGAGGACTCAAGGATCACACTCTGCACCCAAAGGATGCTTTCGTCTTTGCGTGGCCTCGTTGCTTCGAAGTATAAAATGGTTCAAGTGAATGCCGTCGCATGTGTCGTGAACCTCTCTCTGGAGAAAATGAACAAGGTGAGGATCGTACGGTCAGGGTTAGTTCCGCCATTGATAGAAGCTTTGAGGATTGGATCCCCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTCAGTCTAGCGCTTGAAGACGACAATAAAACCGCGATTGGGGTTCTCGGAGCTCTTCCACCGTTGATTCACGCGCTTCGAGTTGGGACTGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCGATGGTTCAAAGTAACAGAACCAAATTGGTTAAGATTGGATCGGTTCCGGTTTTAATTGGGATGGTTAAGTCTGGTCAGATGACGGGTCGGGTTTTGATGATTTTGGGCAATTTGGGTTGTGGGCCGGATGGGCGGGCTGCAATGTTGGATGTGGGTATGGTTGAATGTTTGGTCGGGTTGTTGGCTGGGTCCGAGTCGGTTCATGGATCAATAAAGGAGAGCTGTGTGGCGGTGCTATACGTGTTGAGTCACGGAGGGTTGAGGTTTAAGGCCGTAGCGAAGGCGGCAGGAGTGGTGGAGGCGCTCGAGAAGGCAGAGAAGGAGGTGGGGAGTCATCGAGCGAAGGAAAAGGCAATGAGGGTTTTGGAGATGATGAAGGGCAAAGAGGACGATGAGGAGGAAGAGGTGGATTGGGAGGAGCTGCTCGACTCCGGTCTAGGAAGCCGGAGTCACAACCACCATGATGGCGAGTTTTCCGGGCTCAATGGGACGACCTCAATCCTCTGA 1584 0.5196 MEIQQTLKLMVHHHNRGKENNTPKLKWRKIFTLQRSPPSSKPIQTPPPEEFICPISGTLMADPVIVSSGHSFERASVQSCKDLNFTPQLSDGTTPDFSTVIPNLALKSAISKWCHASSTLLPQPPHRSLTDNLVRTLIFSSSSRKNNANELVGERMLTANPSCCSSSSSVESIATSASSSTPPAQLTAKPSFCYSSPSSSELEPTTPEAEEFISKLRSNQVFVIEESLQNLRKLTRTNEDSRITLCTQRMLSSLRGLVASKYKMVQVNAVACVVNLSLEKMNKVRIVRSGLVPPLIEALRIGSPEAQEHASGALFSLALEDDNKTAIGVLGALPPLIHALRVGTERTRHDSALALYHLSMVQSNRTKLVKIGSVPVLIGMVKSGQMTGRVLMILGNLGCGPDGRAAMLDVGMVECLVGLLAGSESVHGSIKESCVAVLYVLSHGGLRFKAVAKAAGVVEALEKAEKEVGSHRAKEKAMRVLEMMKGKEDDEEEEVDWEELLDSGLGSRSHNHHDGEFSGLNGTTSIL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03826 527 MobiDBLite consensus disorder prediction 505 527 - -
Arst5g03826 527 SUPERFAMILY ARM repeat 210 488 IPR016024 -
Arst5g03826 527 Gene3D - 204 483 IPR011989 -
Arst5g03826 527 SMART arm_5 238 278 IPR000225 GO:0005515
Arst5g03826 527 SMART arm_5 320 360 IPR000225 GO:0005515
Arst5g03826 527 SMART arm_5 400 443 IPR000225 GO:0005515
Arst5g03826 527 SMART arm_5 279 319 IPR000225 GO:0005515
Arst5g03826 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Arst5g03826 527 Coils Coil 474 494 - -
Arst5g03826 527 PANTHER U BOX DOMAIN-CONTAINING 33 488 - -
Arst5g03826 527 FunFam RING-type E3 ubiquitin transferase 207 484 - -
Arst5g03826 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 327 IPR000225 GO:0005515
Arst5g03826 527 SMART Ubox_2 50 113 IPR003613 GO:0004842|GO:0016567
Arst5g03826 527 ProSiteProfiles U-box domain profile. 46 120 IPR003613 GO:0004842|GO:0016567
Arst5g03826 527 SUPERFAMILY RING/U-box 35 121 - -
Arst5g03826 527 Pfam U-box domain 48 116 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03826 Arst-Chr5 98834120 98836304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03826 1 521 U-box Gene Family AT5G40140 52.527 2.66e-170 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03826 - - lja:Lj2g3v1020040.1 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03826 5 98834120 98836304 Arst5g03826 5 98834120 98836304 ECH
Arst5g03826 5 98834120 98836304 Arst4g03615 4 114881794 114885875 PCT