Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03825 ATGGCAAAGGTTTACAACTTATTCCTTTCATTGTGTTTGGTCGTCGTAATACCATCCTTGCAAGCCAATATCTTAGAGAATACTACAAATGTAGATCAACATATCAAAATGGTTGATAATAAATACTGGGAGGAAAGGGCTGCTATTGCTAGAAAGATGAGCGAAGAAGCATATTTTCCTAACCCACATGAACTTTCTAGAAACTTTTCTTCTACCATTGCTGAACATGTGGCTGGTAGCAGGCATGCAAGAAGGAACTTGAATGGTCAAAGGGCAGGAGTTGCATGTGAGGCAACCAATAACATTGACAGATGTTGGAGGTGTGATCCCAATTGGGCAGATAATCGCCAAAAACTTGTAAATTGTGTTCAAGGTTTTGGAAGAAATACTACTGGAGGAAAGGGAGGTCCAATCTACATTGTTACTAGTCCTGCTGACAATGACATGGTTAATCCAAAACCCGGTACCCTTCGCCATGCAGTCACAAGAGATGGACCTTTGTGGATTATCTTTGCTCATAGCATGAATATTAGACTCAATCAAGAGCTCATGGTTTCTAGTAACAAGACTATTGATGGAAGAGGAGTTGATATCTACATTACTAAGGGTGCAGGCATCACTCTCCAATACGTCAATAATGTCATCATCCATGGAATCAAGATTCATGACATTGTTCCCGGTACTGGTGGACTTATTAGGGATTCTGAGAACCATTATGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCTATCTTTGGTGCCAGCAATATTTGGATTGACCATGTTTCCATGAGGAAATGCTCCGATGGACTTATTGACGCCATTATGGGATCAACGGCCATTACCATCTCTAATAGTCATTTCACGGATCATAATGACGTGATGCTCTTTGGTGCTAATGACGAACACACAATTGATAAGGTGATGCAAATCACCCTGGTTTTTAACCACTTTGGTAAGAGGTTAATCCAAAGGATGCCAAGGTGCAGATTCGGATTTGTGCATGTTGTCAATAATGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGTCATCCAACAATTATTAGTGAAGGCAATCGGTTTGTGGCTCCTGATAACAACAATGCTAAAGAGGTCACAAAGAGAGTAACCACTGGAGATTGGAAATCATGGCAATGGAGATCGATCAATGATGAGTTTGAGAATGGAGCATTTTTCGTACAATCTGGACCAGAAATGATAACCAAACCATTCTCAAGCAAGGACATGATTACAGCAAAGCCTGGTTCATATGTGCAAAGACTTACTTCTTTTGCTGGCTCCCTTAAATGTAGAGTTGGTCAACCTTGCTAG 1344 0.4085 MAKVYNLFLSLCLVVVIPSLQANILENTTNVDQHIKMVDNKYWEERAAIARKMSEEAYFPNPHELSRNFSSTIAEHVAGSRHARRNLNGQRAGVACEATNNIDRCWRCDPNWADNRQKLVNCVQGFGRNTTGGKGGPIYIVTSPADNDMVNPKPGTLRHAVTRDGPLWIIFAHSMNIRLNQELMVSSNKTIDGRGVDIYITKGAGITLQYVNNVIIHGIKIHDIVPGTGGLIRDSENHYGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGLIDAIMGSTAITISNSHFTDHNDVMLFGANDEHTIDKVMQITLVFNHFGKRLIQRMPRCRFGFVHVVNNDYTHWEMYAIGGSSHPTIISEGNRFVAPDNNNAKEVTKRVTTGDWKSWQWRSINDEFENGAFFVQSGPEMITKPFSSKDMITAKPGSYVQRLTSFAGSLKCRVGQPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03825 447 SMART amb_all 174 371 IPR002022 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Arst5g03825 447 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Arst5g03825 447 Gene3D - 99 440 IPR012334 -
Arst5g03825 447 Pfam Pectate lyase, N terminus 41 87 IPR007524 GO:0030570
Arst5g03825 447 Pfam Pectate lyase 182 365 IPR002022 -
Arst5g03825 447 SUPERFAMILY Pectin lyase-like 100 438 IPR011050 -
Arst5g03825 447 PANTHER PECTATE LYASE 18-RELATED 50 445 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03825 Arst-Chr5 98813153 98815506 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03825 7 447 Polysaccharide Lyase AT1G14420 58.952 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03825 K01728 - gmx:100810857 654.825